PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.04G249000.1.p | ||||||||
Common Name | GLYMA_04G249000, NAC8 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NAC | ||||||||
Protein Properties | Length: 301aa MW: 34310.1 Da PI: 8.6315 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 166.4 | 9.6e-52 | 7 | 131 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhPtd+elv +yL++k++++++ + +i+e+d+yk++PwdLp ++ +ekewyfFs+rd+ky++g+r+nra+ +gyWkatg dk Glyma.04G249000.1.p 7 LPPGFRFHPTDQELVLHYLCRKCASQPIAV-PIIAEIDLYKYDPWDLPGLASYGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADK 95 79**************************99.88***************7777799*********************************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ + + vg+kk Lvfy g+apkg k++W+mheyrl Glyma.04G249000.1.p 96 PIGH--PKPVGIKKALVFYAGKAPKGDKSNWIMHEYRL 131 **99..789***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.8E-62 | 4 | 157 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.269 | 7 | 157 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.6E-27 | 8 | 131 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MASELQLPPG FRFHPTDQEL VLHYLCRKCA SQPIAVPIIA EIDLYKYDPW DLPGLASYGE 60 KEWYFFSPRD RKYPNGSRPN RAAGTGYWKA TGADKPIGHP KPVGIKKALV FYAGKAPKGD 120 KSNWIMHEYR LADVDRSVRK KNSLRLDDWV LCRIYNKKGT IEKFQPSSDV VVSRKMESSE 180 IEDRKPEILK SGGGCLLPPV PPPQAKAAVK KDYMYFDPSD SIPKLHTDSS CSEHVVSPEF 240 ASEVQSEPKW KEWEKSLEFP FNYVDATLNN SNSFTTQFQG NNQMMSPLQD MFMYWPNKPF 300 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-79 | 3 | 163 | 11 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.1750 | 0.0 | flower| hypocotyl| leaf| pod| root| seed coat| vegetative bud |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.04G249000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU661911 | 0.0 | EU661911.1 Glycine max NAC domain protein (NAC8) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001240958.1 | 0.0 | NAC domain-containing protein | ||||
Swissprot | Q39013 | 1e-144 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | B2ZGQ4 | 0.0 | B2ZGQ4_SOYBN; NAC domain protein | ||||
STRING | GLYMA04G42800.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1258 | 34 | 108 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 1e-143 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.04G249000.1.p |
Entrez Gene | 100805768 |