PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G242100.2.p
Common NameGLYMA_04G242100, LOC100788103
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 597aa    MW: 66484.5 Da    PI: 4.5145
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G242100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS452.62.5e-1382235932374
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                          ++lL+ecA a+s+g+  + ++++++l++++s +g+p qR+aay++e+Laarla+s++++ykal+++e +   +s++laa+++++ev+P++
  Glyma.04G242100.2.p 223 RKLLYECAIALSEGNEVEGSSMINNLRQMVSIQGEPSQRIAAYMVEGLAARLAESGKSIYKALRCKEPP---TSDRLAAMQILFEVCPCF 309
                          689*****************************************************************9...9***************** PP

                 GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefn 179
                          kf++++aN++I eav+ + ++HiiDfdi+qG Q+++L+q+LasR+++pp++R+Tgv++pes+  s   l+++g+rL+k+Ae+lg+pfef+
  Glyma.04G242100.2.p 310 KFGFIAANNTITEAVKDDMKIHIIDFDINQGSQYINLIQTLASRSSKPPHVRLTGVDDPESVqrSVGGLQNIGQRLEKLAEALGLPFEFR 399
                          ************************************************************9999999*********************** PP

                 GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269
                          + va+r++ +++++L+++p+Eal+Vn+++qlh+++desvs+++erd++L+lvksl+Pk+v+vveq++++n+++Fl rf+ea +yysa+f+
  Glyma.04G242100.2.p 400 A-VASRTSIVTPSMLDCSPDEALVVNFAFQLHHMPDESVSTANERDQLLRLVKSLNPKLVTVVEQDVNTNTTPFLPRFVEAYNYYSAVFE 488
                          *.7*************************************************************************************** PP

                 GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslv 359
                          sl+a+lpres++r++vEr++l+r+ivnvvaceg++r+er e ++kWr+r+++aGF++ p+s++++++++ l++ v+ d y+++ee g+l 
  Glyma.04G242100.2.p 489 SLDATLPRESQDRMNVERQCLARDIVNVVACEGEDRIERYEVAGKWRARMTMAGFTSSPMSTNVTDEIRQLIKVVYCDRYKIKEEMGALH 578
                          ****************************************************************************888*********** PP

                 GRAS 360 lgWkdrpLvsvSaWr 374
                          +gW+d++L+++SaW+
  Glyma.04G242100.2.p 579 FGWEDKSLIVASAWK 593
                          **************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.357196573IPR005202Transcription factor GRAS
PfamPF035148.8E-136223593IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 597 aa     Download sequence    Send to blast
MSLVRSADLA PTSYENAKLF SLKGTDVRPG LSSQIFGPDK HRSTYMTDTY PSESYEKYFH  60
DSQTEEIIEP SSSSISGSSI HPDVASSYQI RAISGASMVA NNPFDSSFMS TRHRDAYQSN  120
SGSDLMENGS LDSRNDDGLM RLKLQALERA LLDDSDAEEE EEEEEDIFEA AQSMEIDPDI  180
AEWADSMQNM LLHDSPKETS SSDSNISSIS STKEISQTSQ NPRKLLYECA IALSEGNEVE  240
GSSMINNLRQ MVSIQGEPSQ RIAAYMVEGL AARLAESGKS IYKALRCKEP PTSDRLAAMQ  300
ILFEVCPCFK FGFIAANNTI TEAVKDDMKI HIIDFDINQG SQYINLIQTL ASRSSKPPHV  360
RLTGVDDPES VQRSVGGLQN IGQRLEKLAE ALGLPFEFRA VASRTSIVTP SMLDCSPDEA  420
LVVNFAFQLH HMPDESVSTA NERDQLLRLV KSLNPKLVTV VEQDVNTNTT PFLPRFVEAY  480
NYYSAVFESL DATLPRESQD RMNVERQCLA RDIVNVVACE GEDRIERYEV AGKWRARMTM  540
AGFTSSPMST NVTDEIRQLI KVVYCDRYKI KEEMGALHFG WEDKSLIVAS AWKLPR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-6922859624380Protein SCARECROW
5b3h_D1e-6922859624380Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.226030.0hypocotyl| pod| root| seed coat
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, shoots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G242100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003523408.10.0scarecrow-like protein 1
RefseqXP_006578946.10.0scarecrow-like protein 1
RefseqXP_014630459.10.0scarecrow-like protein 1
RefseqXP_028230078.10.0scarecrow-like protein 1
RefseqXP_028230080.10.0scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A0B2SJ020.0A0A0B2SJ02_GLYSO; Scarecrow-like protein 1
TrEMBLK7KM360.0K7KM36_SOYBN; Uncharacterized protein
STRINGGLYMA04G42090.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]