PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G238700.1.p
Common NameGLYMA_04G238700, Glyma04g41740.1, LOC100811972
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 325aa    MW: 36400.6 Da    PI: 4.9489
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G238700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.2e-19101151155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          ++++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ +l+g
  Glyma.04G238700.1.p 101 KKFRGVRQRP-WGKWAAEIRDPA----RrVRLWLGTYDTAEEAAMVYDNAAIRLRG 151
                          59********.**********82....35*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.37E-33101158No hitNo description
PfamPF008479.1E-13102151IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-21102159IPR016177DNA-binding domain
SMARTSM003807.5E-38102165IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-29102158IPR001471AP2/ERF domain
PROSITE profilePS5103223.578102159IPR001471AP2/ERF domain
PRINTSPR003673.4E-10103114IPR001471AP2/ERF domain
PRINTSPR003673.4E-10125141IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MEDSILCKHT VHRSVTKKLI SPKKSSQTNS STQTERRIVR ISYTDPDATD SSSDEEGFPL  60
VRKRMKRYVN QIEIETAAEK VVRKRPAGEP CRRPAKLHSG KKFRGVRQRP WGKWAAEIRD  120
PARRVRLWLG TYDTAEEAAM VYDNAAIRLR GPDALTNFLT PPQRESPSQA TTVAVTEEAS  180
GSGYDSGDDH CQHNLSSPTS VLHFRSNSES DQKSEQVLRE CEGEGEFLAL DNMPLPAWDE  240
VFNFETPEYP PLLFQEGNFL HDYQSQMLGE TVPFSSDQGF SDSSIVLADS LIDFDKACPP  300
PSTLCQVDDF FQDILLASDP LVLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-22100158362ATERF1
3gcc_A3e-22100158362ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G238700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0310780.0KT031078.1 Glycine max clone HN_CCL_184 AP2-EREBP transcription factor (Glyma04g41740.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003522549.10.0pathogenesis-related genes transcriptional activator PTI6
RefseqXP_028230039.10.0pathogenesis-related genes transcriptional activator PTI6-like
SwissprotQ9SUE34e-52CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBLA0A445L4K40.0A0A445L4K4_GLYSO; Ethylene-responsive transcription factor CRF4
TrEMBLI1JYV50.0I1JYV5_SOYBN; AP2-EREBP transcription factor
STRINGGLYMA04G41740.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.11e-51cytokinin response factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chai C, et al.
    Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance.
    BMC Genomics, 2015. 16: p. 596
    [PMID:26268547]
  3. Zwack PJ,Compton MA,Adams CI,Rashotte AM
    Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance.
    Plant Cell Rep., 2016. 35(3): p. 573-84
    [PMID:26650835]
  4. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]