PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.04G238300.1.p | ||||||||
Common Name | GLYMA_04G238300, LOC100776906 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | WRKY | ||||||||
Protein Properties | Length: 365aa MW: 40437.1 Da PI: 5.2149 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 93.7 | 1.4e-29 | 130 | 191 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK++ g+ +pr+YYrCt++ gC+++k+v+rs+edp+++eitY+g+H+++ Glyma.04G238300.1.p 130 LDDGYSWRKYGQKDILGALYPRGYYRCTHRnvqGCMATKQVQRSDEDPTIFEITYRGKHTCT 191 59***************************98999**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 23.548 | 125 | 193 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.8E-29 | 127 | 192 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.09E-26 | 129 | 192 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.7E-42 | 130 | 192 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.5E-27 | 131 | 190 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0010193 | Biological Process | response to ozone | ||||
GO:0042542 | Biological Process | response to hydrogen peroxide | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MDNMGDPKSI IHELLQGLEL ARQLQVYLHL PTSSQETRDL LIQKIISTFE KALEMVNCKG 60 PVPAGESSHY PLGAALIRVS DSPLSSSPRS EDSDRDFKDQ DPNAFKKRNT LPRWTKHIRV 120 TPGMGVEGPL DDGYSWRKYG QKDILGALYP RGYYRCTHRN VQGCMATKQV QRSDEDPTIF 180 EITYRGKHTC TMANNVGSSS SPIPPENQEP SLNNTNPQQQ NILQNLEQQQ SDLLLSLRKG 240 LRVQTENLDS PDQQSLVPFR FPLSTNIKIE SQVFPSPVLE NFISSPSYMS SAASGISHFS 300 VSPSGVNSFG GNPNLANSES QINDMIPATT TSAPNSSTVG LEFPFDQFEF DGQNFTFDNP 360 PFFS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 2e-20 | 130 | 190 | 8 | 68 | OsWRKY45 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.12112 | 0.0 | flower| leaf |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00525 | DAP | Transfer from AT5G24110 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.04G238300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031232 | 0.0 | KT031232.1 Glycine max clone HN_CCL_107 WRKY transcription factor (Glyma06g13090.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003523388.1 | 0.0 | probable WRKY transcription factor 30 | ||||
Refseq | XP_028230034.1 | 0.0 | probable WRKY transcription factor 30 | ||||
TrEMBL | A0A445L4Y8 | 0.0 | A0A445L4Y8_GLYSO; Putative WRKY transcription factor 30 | ||||
TrEMBL | K7KLZ5 | 0.0 | K7KLZ5_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA04G41701.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF493 | 34 | 157 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24110.1 | 4e-48 | WRKY DNA-binding protein 30 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.04G238300.1.p |
Entrez Gene | 100776906 |