PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G231400.1.p
Common NameGLYMA_04G231400, LOC100499926
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 246aa    MW: 28360.5 Da    PI: 5.1952
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G231400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.71.1e-193688456
                         -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                         +++f++eq++ Le  Fe+++++  +++ +LA+ lgL+ rqV +WFqNrRa++k
  Glyma.04G231400.1.p 36 KRRFSDEQIRSLECIFESESKLEPRKKMQLARDLGLQPRQVAIWFQNRRARWK 88
                         568*************************************************9 PP
2HD-ZIP_I/II121.93.2e-3934126193
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          e+krr+s+eq+++LE  Fe+e+kLep++K++lar+Lglqprqva+WFqnrRAR+k+k++E++y++Lk++yd+l+++ e+L+ke+++L+ e
  Glyma.04G231400.1.p  34 ENKRRFSDEQIRSLECIFESESKLEPRKKMQLARDLGLQPRQVAIWFQNRRARWKSKRIEQEYRKLKDEYDNLASRFESLKKEKDSLQLE 123
                          58**************************************************************************************99 PP

          HD-ZIP_I/II  91 lke 93 
                          l++
  Glyma.04G231400.1.p 124 LQK 126
                          986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.6E-192190IPR009057Homeodomain-like
SuperFamilySSF466891.92E-182390IPR009057Homeodomain-like
PROSITE profilePS5007117.543090IPR001356Homeobox domain
SMARTSM003893.3E-163394IPR001356Homeobox domain
PfamPF000464.1E-173688IPR001356Homeobox domain
CDDcd000869.46E-143691No hitNo description
PRINTSPR000318.7E-66170IPR000047Helix-turn-helix motif
PROSITE patternPS0002706588IPR017970Homeobox, conserved site
PRINTSPR000318.7E-67086IPR000047Helix-turn-helix motif
PfamPF021832.6E-1190131IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MMEGDENIQA SSKGKYVESF NCSEAPRKKS KKIENKRRFS DEQIRSLECI FESESKLEPR  60
KKMQLARDLG LQPRQVAIWF QNRRARWKSK RIEQEYRKLK DEYDNLASRF ESLKKEKDSL  120
QLELQKLSDL LEACQDDGRE DKAGKENSIE DGGSGSGYSS WKPEAKPRFS NEGLEERIGV  180
YSDDQNENSI IRGGEKSEDK GHQLLRMDDH AEMPLASLEK WYSGVDPSGI LDQSCSSSQW  240
LDFWT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.242510.0cotyledon| leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G231400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0901300.0BT090130.1 Soybean clone JCVI-FLGm-3P11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001238093.21e-178homeobox associated leucine zipper-containing protein
RefseqXP_028229909.11e-178homeobox-leucine zipper protein ATHB-12-like
TrEMBLA0A0B2QD541e-177A0A0B2QD54_GLYSO; Homeobox-leucine zipper protein ATHB-7
TrEMBLI1JYL01e-177I1JYL0_SOYBN; Uncharacterized protein
STRINGGLYMA04G40960.11e-177(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120052635
Representative plantOGRP12916189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.24e-39homeobox 7