PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G223300.1.p
Common NameGLYMA_04G223300, Glyma04g40130.1, WRKY58
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 318aa    MW: 35855.6 Da    PI: 5.4483
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G223300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY80.61.7e-25136196259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                          dD ++WrKYGqKe+ +s+fprsY+rCt +   gC+++k+v+r +e+p++ +itY g H+++
  Glyma.04G223300.1.p 136 DDNHAWRKYGQKEILNSQFPRSYFRCTRKfeqGCRATKQVQRIQENPDMYTITYIGFHTCK 196
                          8**************************98889***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-24125196IPR003657WRKY domain
SuperFamilySSF1182902.22E-24132196IPR003657WRKY domain
SMARTSM007745.0E-36135197IPR003657WRKY domain
PROSITE profilePS5081119.152136193IPR003657WRKY domain
PfamPF031063.1E-24136196IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MSILFPRSSS ATKRKRVIRE LVQGRDYATQ LKFLLQKPIG PDGSVSAKEL VANVLRSFTE  60
TLSVLTSSEV AISGDHHRDE VAQNLVISGE DASQVESIDP RSEGSTESKK GSKDRRGSYK  120
RRKTEQTWTI VAQTTDDNHA WRKYGQKEIL NSQFPRSYFR CTRKFEQGCR ATKQVQRIQE  180
NPDMYTITYI GFHTCKDTLK APQMVTHSET WDSFLGPDAN DVPNEHDSTI GSQSLIVKQE  240
YPNDETDPSD LTDANFWSDF KDFELSNDKP AGLKIASENA DTVYSCTGSR SLDMDFGIFS  300
SHFCSTEDFH FDESQLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-22129196269OsWRKY45
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.382220.0hypocotyl| leaf
Function -- GeneRIF ? help Back to Top
  1. functional analysis of role in growth and development
    [PMID: 27335454]
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G223300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU3753540.0EU375354.1 Glycine max transcription factor (WRKY58) mRNA, complete cds.
GenBankKT0312310.0KT031231.1 Glycine max clone HN_CCL_108 WRKY transcription factor (Glyma04g40130.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001237638.10.0WRKY transcription factor 58
RefseqXP_028229811.10.0WRKY DNA-binding transcription factor 70-like
TrEMBLA0A445L3T40.0A0A445L3T4_GLYSO; Putative WRKY transcription factor 70
TrEMBLB0LUS30.0B0LUS3_SOYBN; Transcription factor
STRINGGLYMA04G40130.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47003056
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.11e-43WRKY DNA-binding protein 70
Publications ? help Back to Top
  1. Chai C, et al.
    Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance.
    BMC Genomics, 2015. 16: p. 596
    [PMID:26268547]
  2. Yang Y, et al.
    Functional analysis of structurally related soybean GmWRKY58 and GmWRKY76 in plant growth and development.
    J. Exp. Bot., 2016. 67(15): p. 4727-42
    [PMID:27335454]