PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G222200.1.p
Common NameGLYMA_04G222200, LOC100807712
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bZIP
Protein Properties Length: 297aa    MW: 32912.8 Da    PI: 5.8746
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G222200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_129.31.9e-0995152461
                          XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                           kr++r   NR +A rs +RK  ++ +Le+k+++L++e +aL  +l+  +     l++
  Glyma.04G222200.1.p  95 PKRAKRILANRQSAARSKERKACYVLQLERKFQSLQTEATALCARLSLFQRDTTGLTT 152
                          59****************************************9999887766665555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.0E-1492156IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.69194157IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.91E-996150No hitNo description
Gene3DG3DSA:1.20.5.1706.9E-796157No hitNo description
PfamPF001705.8E-896148IPR004827Basic-leucine zipper domain
CDDcd147033.45E-1897146No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MSFSHHRRSQ SEMHFRISDD FDLEVDLSPS HHFQYPAPLL QDSGSIPQSP QPETARSAHQ  60
RSNSADASYS SLVDGIEAKK ALSPDKLAEL WTADPKRAKR ILANRQSAAR SKERKACYVL  120
QLERKFQSLQ TEATALCARL SLFQRDTTGL TTENTELKLR LQAMEQQANL CDALNEALKK  180
EVDGLKIATG EIVMHNAHGL GMHPLTYSQA PFFSHQSQHG QSELQAMQMP QLHSLSSNVP  240
TSDEPLFDLD IPYDLSEMLS SESIGQFQGL DIGDGVLHNL MPDCPSISVN NINNAF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.618070.0leaf| pod
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. Strongly expressed in mature pollen. {ECO:0000269|PubMed:27896439}.
Functional Description ? help Back to Top
Source Description
UniProtTranscrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269|PubMed:27896439}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G222200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001345694.10.0bZIP transcription factor 85
SwissprotO228732e-66BZP18_ARATH; bZIP transcription factor 18
TrEMBLI1JYB60.0I1JYB6_SOYBN; Uncharacterized protein
STRINGGLYMA04G40010.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15483497
Representative plantOGRP12617181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40620.19e-69bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Liao Y, et al.
    Soybean GmbZIP44, GmbZIP62 and GmbZIP78 genes function as negative regulator of ABA signaling and confer salt and freezing tolerance in transgenic Arabidopsis.
    Planta, 2008. 228(2): p. 225-40
    [PMID:18365246]
  3. Pawar V, et al.
    A novel family of plant nuclear envelope-associated proteins.
    J. Exp. Bot., 2016. 67(19): p. 5699-5710
    [PMID:27630107]
  4. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  6. Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S
    Efficient gene tagging in Arabidopsis thaliana using a gene trap approach.
    Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7
    [PMID:9356517]