PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.04G218700.1.p | ||||||||
Common Name | GLYMA_04G218700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | WRKY | ||||||||
Protein Properties | Length: 197aa MW: 22521.5 Da PI: 6.3051 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 93.6 | 1.4e-29 | 110 | 168 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +dDgy+WrKYG+K+vk++++pr+YY+C+ +gC+vkk+ver+++d ++v +tY g Hnhe Glyma.04G218700.1.p 110 MDDGYKWRKYGKKTVKNNPNPRNYYKCSGEGCNVKKRVERDRDDSNYVLTTYDGVHNHE 168 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.4E-31 | 97 | 170 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.09E-27 | 102 | 170 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.928 | 105 | 170 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.6E-32 | 110 | 169 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.4E-23 | 111 | 168 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MDYYFGNPNP KPYDNRHSAV VNTESPSSEF MLSDYLVLED AVDNQESWSQ STETESSEKG 60 NSSDVSHGFG DATFSNTNMH IKCENNGIKR KKEEVSQMIT FRTRSQLEVM DDGYKWRKYG 120 KKTVKNNPNP RNYYKCSGEG CNVKKRVERD RDDSNYVLTT YDGVHNHESP STAYYSQIPL 180 VHSNHDWPQL HPSANS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-24 | 101 | 171 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 2e-24 | 101 | 171 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.26846 | 0.0 | cotyledon| epicotyl |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 22930360 | 0.0 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Involved in defense responses. May act as positive regulator of salicylic acid (SA)-mediated signaling and negative regulator of jasmonic acid (JA)-mediated signaling (PubMed:21030507). {ECO:0000250, ECO:0000269|PubMed:21030507}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.04G218700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ322691 | 0.0 | DQ322691.1 Glycine max WRKY21 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001237327.2 | 1e-147 | WRKY transcription factor 21 | ||||
Refseq | XP_028229740.1 | 1e-147 | probable WRKY transcription factor 50 | ||||
Swissprot | Q93WU9 | 1e-41 | WRK51_ARATH; Probable WRKY transcription factor 51 | ||||
TrEMBL | A0A445L3E7 | 1e-144 | A0A445L3E7_GLYSO; Putative WRKY transcription factor 51 | ||||
TrEMBL | I1JY76 | 1e-145 | I1JY76_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA04G39650.1 | 1e-146 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1120 | 34 | 110 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64810.1 | 8e-44 | WRKY DNA-binding protein 51 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.04G218700.1.p |
Publications ? help Back to Top | |||
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