PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.04G218400.5.p | ||||||||
Common Name | GLYMA_04G218400, LOC100127389 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | WRKY | ||||||||
Protein Properties | Length: 189aa MW: 21256.3 Da PI: 10.198 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 37.6 | 4.3e-12 | 157 | 180 | 1 | 24 |
---SS-EEEEEEE--TT-SS-EEE CS WRKY 1 ldDgynWrKYGqKevkgsefprsY 24 ldDgy+WrKYGqK+vk++++pr+Y Glyma.04G218400.5.p 157 LDDGYKWRKYGQKVVKNTQHPRNY 180 59*********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.2E-14 | 142 | 180 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.75E-11 | 149 | 180 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 13.827 | 152 | 180 | IPR003657 | WRKY domain |
SMART | SM00774 | 0.0034 | 157 | 185 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.5E-8 | 158 | 180 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MMSTTSQTNV NHSLFEEQDQ IPTQMGLFNI PFPPNQTYPP LGCQTGTLKS ISAIAPSLSS 60 ATSFSETLLS TAVQRPREDL TSNLLAGGGG QLLSLNRSRV NSWAWEEVSD CLMGKRIGGD 120 DNHHLGVSAM KMKKMKARRK VREPRFCFKT MSDVDVLDDG YKWRKYGQKV VKNTQHPRNY 180 KLLFRWKD* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.3474 | 0.0 | meristem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.04G218400.5.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU019581 | 1e-124 | EU019581.1 Glycine max WRKY45 (WRKY45) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006578818.1 | 1e-141 | probable WRKY transcription factor 13 isoform X4 | ||||
Swissprot | Q9SVB7 | 5e-28 | WRK13_ARATH; Probable WRKY transcription factor 13 | ||||
TrEMBL | K7KLL0 | 1e-139 | K7KLL0_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA04G39621.1 | 1e-132 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39410.1 | 2e-21 | WRKY DNA-binding protein 13 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.04G218400.5.p |
Entrez Gene | 100127389 |