PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.04G218400.4.p | ||||||||
Common Name | GLYMA_04G218400, LOC100127389 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 194aa MW: 21721.8 Da PI: 9.9162 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 32.2 | 2.1e-10 | 157 | 178 | 1 | 22 |
---SS-EEEEEEE--TT-SS-E CS WRKY 1 ldDgynWrKYGqKevkgsefpr 22 ldDgy+WrKYGqK+vk++++p Glyma.04G218400.4.p 157 LDDGYKWRKYGQKVVKNTQHPS 178 59*****************995 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.6E-12 | 142 | 178 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.75E-9 | 149 | 178 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 12.036 | 152 | 177 | IPR003657 | WRKY domain |
SMART | SM00774 | 0.0018 | 157 | 190 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.7E-6 | 158 | 178 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 194 aa Download sequence Send to blast |
MMSTTSQTNV NHSLFEEQDQ IPTQMGLFNI PFPPNQTYPP LGCQTGTLKS ISAIAPSLSS 60 ATSFSETLLS TAVQRPREDL TSNLLAGGGG QLLSLNRSRV NSWAWEEVSD CLMGKRIGGD 120 DNHHLGVSAM KMKKMKARRK VREPRFCFKT MSDVDVLDDG YKWRKYGQKV VKNTQHPSAT 180 CCRNYKLLFR WKD* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Gma.3474 | 0.0 | meristem |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.04G218400.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU019581 | 1e-123 | EU019581.1 Glycine max WRKY45 (WRKY45) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_014630376.1 | 1e-145 | probable WRKY transcription factor 13 isoform X3 | ||||
Swissprot | Q9SVB7 | 3e-26 | WRK13_ARATH; Probable WRKY transcription factor 13 | ||||
TrEMBL | A0A0R0KHP6 | 1e-144 | A0A0R0KHP6_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA04G39621.1 | 1e-130 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G39410.1 | 9e-20 | WRKY DNA-binding protein 13 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.04G218400.4.p |
Entrez Gene | 100127389 |