PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G217400.1.p
Common NameGLYMA_04G217400, Glyma04g39510.1, LOC100793215
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 282aa    MW: 30850.4 Da    PI: 10.0135
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G217400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.42.3e-20135184255
                  AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+W+AeIrd +     + +r++lg+f tae Aa+a+++a+++++g
  Glyma.04G217400.1.p 135 KYRGVRQRP-WGKWAAEIRDpF-----KaARVWLGTFETAEAAARAYDEAALRFRG 184
                          8********.**********66.....56************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.6E-33134193IPR001471AP2/ERF domain
CDDcd000181.40E-23135194No hitNo description
SMARTSM003805.2E-37135198IPR001471AP2/ERF domain
PROSITE profilePS5103225.659135192IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-23135193IPR016177DNA-binding domain
PfamPF008475.7E-14135184IPR001471AP2/ERF domain
PRINTSPR003677.8E-12136147IPR001471AP2/ERF domain
PRINTSPR003677.8E-12158174IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MMNNPALLSR LFPGINRERE MSAMVSALTH VVSGEVPTGD SSSVLHHQPH DDDAVTVKPN  60
MPSTTPFSST YVVATSSLKR SRQHDTYTPS FSHPPSSFPA MPTSAECSKS GMGNAVYEYR  120
TRGTENVKKE EGRRKYRGVR QRPWGKWAAE IRDPFKAARV WLGTFETAEA AARAYDEAAL  180
RFRGSKAKLN FPENVTLRQP QFTVSTSTDP FQLSGTNLYD HRMFLTSNTM ASHHLQSSLP  240
LPPATSSSLT SPPQNITSLS SLYSAQLPPW SASGHSSSSS P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-24134195163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A6e-24134195466ATERF1
3gcc_A6e-24134195466ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.272610.0leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G217400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0310770.0KT031077.1 Glycine max clone HN_CCL_100 AP2-EREBP transcription factor (Glyma04g39510.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003523249.10.0ethylene-responsive transcription factor ABR1
TrEMBLA0A0K2CTB30.0A0A0K2CTB3_SOYBN; AP2-EREBP transcription factor (Fragment)
STRINGGLYMA04G39510.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49333254
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.11e-26related to AP2 6
Publications ? help Back to Top
  1. Chai C, et al.
    Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance.
    BMC Genomics, 2015. 16: p. 596
    [PMID:26268547]