PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G213300.1.p
Common NameGLYMA_04G213300, LOC100781170
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 484aa    MW: 52632.7 Da    PI: 4.5669
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G213300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM156.79.9e-4961322128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                          +pGfrF+Ptd el+ ++Lk+kv+gkk++  e+i+e+d+yk+ PwdLp +  +k+++ +wyfF++r kky+tg r nrat++gyWk+tgkd
  Glyma.04G213300.1.p   6 MPGFRFQPTDVELIEYFLKRKVRGKKFPS-EIIAELDLYKFAPWDLPdMsLLKNGDLNWYFFCPRGKKYSTGGRLNRATEAGYWKTTGKD 94 
                          69**************************9.89**************96346677888********************************* PP

                  NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +++ + ++++vg+ ktLvf++grapkg +tdWvmhe+rl
  Glyma.04G213300.1.p  95 RAIEH-NNRVVGMIKTLVFHTGRAPKGDRTDWVMHEFRL 132
                          ****9.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100554.1835155IPR003441NAC domain
SuperFamilySSF1019413.4E-586155IPR003441NAC domain
PfamPF023655.1E-257132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MAKPKMPGFR FQPTDVELIE YFLKRKVRGK KFPSEIIAEL DLYKFAPWDL PDMSLLKNGD  60
LNWYFFCPRG KKYSTGGRLN RATEAGYWKT TGKDRAIEHN NRVVGMIKTL VFHTGRAPKG  120
DRTDWVMHEF RLDDKVLADE GVLQDSYVIC RVYQKEGPGP RNGAQYGKPY EEKEWETDEE  180
IDSVQSAPVA AVCAPVPIQP SESHISVANY IHPSTSGCAG LTSVSCVSEL MPSCSTHPSA  240
PSNPVGTVSC VSELIPSCSE PHHLPSNNQV GSVSCVSEFM PSCSAHPSAP NSQVGSVSRV  300
SEFMPSCSAH PSAPNCQVGS VSSASELMPS FSDHPSAPSN QVGSVSCVPE LMTSCSAHPS  360
APNNQVDNDI LSLLDCFFED DDTLAVKENN RIENIDDPDQ ANNADGALCS DPNAIFEELG  420
DLNSLVGLGE GSFSCGQKNE YTTSEMLYTV DIFGSCDHDF LELLDLETPQ LWLNKHGSGS  480
QDK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-46715617169Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.389590.0cotyledon| somatic embryo| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the epidermal cells of the root apical region. {ECO:0000269|PubMed:20388856}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G213300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU6619120.0EU661912.1 Glycine max NAC domain protein (NAC10) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003523228.10.0NAC domain-containing protein 82
SwissprotQ9FY821e-84NAC82_ARATH; NAC domain-containing protein 82
TrEMBLI1JY240.0I1JY24_SOYBN; Uncharacterized protein
STRINGGLYMA04G39140.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33023465
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09330.47e-80NAC domain containing protein 82
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Deeken R, et al.
    Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments.
    Plant J., 2008. 55(5): p. 746-59
    [PMID:18485061]
  3. Ohbayashi I, et al.
    Evidence for a Role of ANAC082 as a Ribosomal Stress Response Mediator Leading to Growth Defects and Developmental Alterations in Arabidopsis.
    Plant Cell, 2017. 29(10): p. 2644-2660
    [PMID:28899981]