PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G202000.1.p
Common NameGLYMA_04G202000
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LFY
Protein Properties Length: 324aa    MW: 36478.5 Da    PI: 8.3452
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G202000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY1862.9e-5711591147
              FLO_LFY   1 mdpeafsaslfkwdpraaa....aapparlleeaavseap....leaaaaaaarklreleelfkayGvryltvakiaelGftvstLvdmk 82 
                          mdp+af+aslfkwdpr++     a+pp+  l e a++++p    ++ a +aa r+l +leelf+ayG+ry+t+akiaelGftvstLvdmk
  Glyma.04G202000.1.p   1 MDPDAFTASLFKWDPRTVLppapAPPPRPSLLEYAMAPPPvttaFHPARTAAPRELGGLEELFQAYGIRYYTAAKIAELGFTVSTLVDMK 90 
                          9***************99866544444555555555555533222333334444466********************************* PP

              FLO_LFY  83 deelddlmkslseifrldllvGeryGikaavraerrrleeeeaekkrrk...llsedeet.aldalsqe 147
                          deeldd+m+sls+ifr+dllvGeryGikaavraerrr+e+++ +++ ++   lls+d++t aldalsqe
  Glyma.04G202000.1.p  91 DEELDDMMNSLSQIFRWDLLVGERYGIKAAVRAERRRVEDDDIKRRNNNsnnLLSTDTTTnALDALSQE 159
                          ****************************************886655544555778887766*******9 PP
2FLO_LFY359.26.9e-110160308237385
              FLO_LFY 237 epgevargkknGLDYLfdLyeqCrefLlqvqkiakerGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrraf 326
                          +pgevargkknGLDYLf+LyeqCrefL+qvq+iak+rGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdee sn+lrraf
  Glyma.04G202000.1.p 160 DPGEVARGKKNGLDYLFHLYEQCREFLMQVQAIAKDRGEKCPTKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEVSNELRRAF 249
                          69**************************************************************************************** PP

              FLO_LFY 327 kergenvGawrqacykplvaiaarqgwdidavfnahprLsiWYvPtkLrqLChlerska 385
                          kergenvGawrqacykplvaiaarqgwdida+fnahprLsiWYvPtkLrqLCh+er++ 
  Glyma.04G202000.1.p 250 KERGENVGAWRQACYKPLVAIAARQGWDIDAIFNAHPRLSIWYVPTKLRQLCHAERNSV 308
                          ********************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016988.6E-641159IPR002910Floricaula/leafy protein
PfamPF016985.9E-107160307IPR002910Floricaula/leafy protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MDPDAFTASL FKWDPRTVLP PAPAPPPRPS LLEYAMAPPP VTTAFHPART AAPRELGGLE  60
ELFQAYGIRY YTAAKIAELG FTVSTLVDMK DEELDDMMNS LSQIFRWDLL VGERYGIKAA  120
VRAERRRVED DDIKRRNNNS NNLLSTDTTT NALDALSQED PGEVARGKKN GLDYLFHLYE  180
QCREFLMQVQ AIAKDRGEKC PTKVTNQVFR YAKKAGASYI NKPKMRHYVH CYALHCLDEE  240
VSNELRRAFK ERGENVGAWR QACYKPLVAI AARQGWDIDA IFNAHPRLSI WYVPTKLRQL  300
CHAERNSVSA SSSVSAGSAH LPF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2vy1_A1e-10216031815173PROTEIN LEAFY
2vy2_A1e-10216031815173PROTEIN LEAFY
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in leaf, leaflet, inflorescence and lateral shoot primordia on the main shoot axis, and in floral organ and carpel primordia.
Functional Description ? help Back to Top
Source Description
UniProtMay regulate indeterminacy during leaf and flower development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G202000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4488100.0DQ448810.1 Glycine max LEAFY-like protein (LFY) mRNA, LFY-1 allele, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014630701.10.0protein UNIFOLIATA-like
SwissprotO485591e-112UNI_PEA; Protein UNIFOLIATA
TrEMBLA0A0R0KH090.0A0A0R0KH09_SOYBN; Uncharacterized protein
STRINGGLYMA04G37900.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80333346
Representative plantOGRP70181619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.11e-101floral meristem identity control protein LEAFY (LFY)