PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.04G201900.1.p | ||||||||
Common Name | GLYMA_04G201900, LOC100799190 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 263aa MW: 29209.7 Da PI: 6.9273 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.5 | 8.9e-20 | 86 | 135 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp+ + +r++lg+f tae Aa a+++a+++++g Glyma.04G201900.1.p 86 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFETAEAAALAYDEAALRFKG 135 7********.**********94....45***********************9987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 5.4E-33 | 85 | 144 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.86E-21 | 86 | 144 | No hit | No description |
SMART | SM00380 | 1.1E-37 | 86 | 149 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-22 | 86 | 144 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 9.7E-14 | 86 | 135 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.948 | 86 | 143 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-11 | 87 | 98 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-11 | 109 | 125 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 263 aa Download sequence Send to blast |
MEGRSISHSS EREEEYGLFP IYSERSQQDM SAMVSALTQV IGGSNSDSLH MHEGLLTSSH 60 NNTSTQNTNE QSQVQQQEQG SVRRRHYRGV RQRPWGKWAA EIRDPKKAAR VWLGTFETAE 120 AAALAYDEAA LRFKGSKAKL NFPERVQGTA SEFGYLTNQH MSSSSTNSNP VAPHLTTQET 180 YSPSHFQYAQ QQFMSGESNS FSNQDMLRFY GGDNMFVSSQ QSASSSSSTA LSQQQQEELL 240 KFSMQFGGSS HSNHSGNWRG GH* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-27 | 85 | 146 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during the S phase of the cell cycle. {ECO:0000269|PubMed:23616605}. | |||||
Uniprot | TISSUE SPECIFICITY: Strongly expressed in proliferating cells. Detected in root tips, stipules, shoot apex, floral tissues, young siliques and abscission zones. {ECO:0000269|PubMed:23616605}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.04G201900.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 4e-91 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003522453.1 | 0.0 | ethylene-responsive transcription factor ERF114 | ||||
Swissprot | Q9FH54 | 2e-59 | EF114_ARATH; Ethylene-responsive transcription factor ERF114 | ||||
TrEMBL | A0A0R0KAJ2 | 0.0 | A0A0R0KAJ2_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA06G17180.2 | 1e-139 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF985 | 34 | 115 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G61890.1 | 1e-33 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.04G201900.1.p |
Entrez Gene | 100799190 |
Publications ? help Back to Top | |||
---|---|---|---|
|