PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G184200.1.p
Common NameGLYMA_04G184200
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 417aa    MW: 48541 Da    PI: 6.9788
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G184200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.81.9e-16199241145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          ++ WT eEd+ l++++ + G++ W+ Ia +++ gRt++++k++w+
  Glyma.04G184200.1.p 199 KDTWTDEEDKVLIEVHDEVGNK-WAEIATRLP-GRTENSIKNHWN 241
                          679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.972149193IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.2E-12173205IPR009057Homeodomain-like
SuperFamilySSF466893.75E-26173252IPR009057Homeodomain-like
PROSITE profilePS5129426.703194248IPR017930Myb domain
SMARTSM007171.4E-15198246IPR001005SANT/Myb domain
PfamPF002492.9E-15199241IPR001005SANT/Myb domain
CDDcd001671.44E-11201244No hitNo description
Gene3DG3DSA:1.10.10.601.0E-18206242IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MDLETMFKET YVSQPTHLQE SCLQPSLKDV LLSSYGFFKD FHHIDQFHHV NISSSNTIQT  60
PNFDAFDNFT NTGSSPDFDF MISQRNQLDM MVANQRFLPF NPQEIKPSNF VVPYEVSCTS  120
PVYYYKRVGV NKNNKSYPTT RRTFKVRKKS NIVKGKWTID DGFTISNSIQ PHIAKILPGR  180
IGKQRRERWH NHLRPDIKKD TWTDEEDKVL IEVHDEVGNK WAEIATRLPG RTENSIKNHW  240
NATKRRQHSK RKCRSKYLRG TLLQEYIKSL NLDKNPPRYY RRKCSSNYGS AIMSDDNKIS  300
TTLPQTAFQF CAATDFLAPN YDFRVVPDFF FGENLFEEGC NVDSLLDGVP CAPLMDKKDF  360
EEKLQCDDLT MCVPFVNIDE NHIETEMPLE MLEVELKKEL DLVEMMSQIN NEILHV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C4e-331522472104C-Myb DNA-Binding Domain
1msf_C4e-331522472104C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in cellularized but not uncellularized female gametophytes. {ECO:0000269|PubMed:16214903}.
UniprotTISSUE SPECIFICITY: Expressed at high levels in the synergid cells of the female gametophyte, and at lower levels in the endosperm of young seeds and the trichomes of young leaves and sepals. {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G184200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ6868710.0FJ686871.1 Glycine max clone gmw1-61M05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006582524.10.0transcription factor MYB98
SwissprotQ9S7L27e-72MYB98_ARATH; Transcription factor MYB98
TrEMBLA0A0R0KEM60.0A0A0R0KEM6_SOYBN; Uncharacterized protein
STRINGGLYMA06G19280.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15703196
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.13e-74myb domain protein 98
Publications ? help Back to Top
  1. Mendes MA, et al.
    Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis.
    Development, 2016. 143(15): p. 2780-90
    [PMID:27338615]