PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G177300.1.p
Common NameGLYMA_04G177300, Glyma04g34720.1, MYB143
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 293aa    MW: 31797.8 Da    PI: 8.4622
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G177300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.34.1e-1481125347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT+eE++l++ + ++ G+g+W+ I+r   k+Rt+ q+ s+ qky
  Glyma.04G177300.1.p  81 PWTEEEHKLFLVGLQKVGKGDWRGISRNYVKTRTPTQVASHAQKY 125
                          7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.51974130IPR017930Myb domain
SuperFamilySSF466896.13E-1776130IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-1677128IPR006447Myb domain, plants
SMARTSM007174.6E-978128IPR001005SANT/Myb domain
CDDcd001671.16E-981126No hitNo description
PfamPF002492.3E-1181125IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-1081125IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006338Biological Processchromatin remodeling
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0035066Biological Processpositive regulation of histone acetylation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003713Molecular Functiontranscription coactivator activity
GO:0004402Molecular Functionhistone acetyltransferase activity
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MLLSSSCSAA GSAVSGEIML FGVRVVVDSM RKSVSMNNLS QYELPRDAAN AKDDVAAGYA  60
SADDAAPINS GKNRDRKRGI PWTEEEHKLF LVGLQKVGKG DWRGISRNYV KTRTPTQVAS  120
HAQKYFLRRT NLNRRRRRSS LFDITTDSVS TTPVEEGQIQ HQDNVSLFRP VYPVTPEGSY  180
MNGFPMMSMY PKDVGSRVMS VQAGNPMETL TLEQGNVEQN DPSTKLVCTI PIVPDHSGST  240
VSDITASLSS IDPPTLSLGL SLSSSQRQTS STHSALHALP CFNNQDSIIS VA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.46600.0cotyledon| pod| root| somatic embryo| stem
Functional Description ? help Back to Top
Source Description
UniProtBinds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269|PubMed:21030505}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G177300.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269|PubMed:21030505}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311900.0KT031190.1 Glycine max clone HN_CCL_89 MYB/HD-like transcription factor (Glyma04g34720.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001236016.10.0MYB transcription factor MYB143
RefseqXP_028229165.10.0transcription factor MYB1R1-like
SwissprotQ2V9B03e-69MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBLA0A445L1K20.0A0A445L1K2_GLYSO; Transcription factor MYB1R1 isoform A
TrEMBLQ0PJI10.0Q0PJI1_SOYBN; MYB transcription factor MYB143
STRINGGLYMA04G34720.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42483154
Representative plantOGRP3941699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74840.24e-46MYB_related family protein
Publications ? help Back to Top
  1. Shin D, et al.
    Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance.
    Plant Physiol., 2011. 155(1): p. 421-32
    [PMID:21030505]
  2. Chai C, et al.
    Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance.
    BMC Genomics, 2015. 16: p. 596
    [PMID:26268547]