PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G174500.1.p
Common NameGLYMA_04G174500
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HB-other
Protein Properties Length: 267aa    MW: 29455.2 Da    PI: 4.2933
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G174500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.94e-0979120344
                          --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHH CS
             Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqV 44 
                          k+++++ eq++ Le+ F +++++  e++ +LAk+lgL+ rqV
  Glyma.04G174500.1.p  79 KKRRLSVEQVRFLEKSFDEENKLEPERKIRLAKELGLQPRQV 120
                          56689************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.56E-958121IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-965121IPR009057Homeodomain-like
PROSITE profilePS500719.18374134IPR001356Homeobox domain
SMARTSM003895.9E-477132IPR001356Homeobox domain
PfamPF000461.8E-679120IPR001356Homeobox domain
CDDcd000861.01E-879120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MAGGSVFCST SSSSNLTTTT QPPLDSLFLS ASSPFLGSRS IVSFGDVQGG KGCNDSFFSS  60
YDEHGDHEDM DEYFHQPEKK RRLSVEQVRF LEKSFDEENK LEPERKIRLA KELGLQPRQV  120
ARLTEKVLGR KKNEGNLEQA ETNGLQEPLQ KSLADSASEG EGSKVSIGAC KQEDINSAKS  180
DIFDSSESPH CTDGIHSALL ETGDSSYVFE PDQSDVSQDE EDNLSKTLLP HFIFPKLEDV  240
DYSDLPHGSC NFGIPEEDQA IWSWPY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.616370.0stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G174500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY8236711e-177AY823671.1 Glycine max HDZip I protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028229135.11e-177homeobox-leucine zipper protein HAT5-like isoform X2
TrEMBLA0A0R0K9U70.0A0A0R0K9U7_SOYBN; Uncharacterized protein
STRINGGLYMA04G34341.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15003499
Representative plantOGRP12916189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-17homeobox 1