PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G173500.1.p
Common NameGLYMA_04G173500
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 532aa    MW: 58234 Da    PI: 6.7844
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G173500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.76.6e-30245304159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          ++Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv+k+v+r+a+d +++ +tYeg+Hnh+
  Glyma.04G173500.1.p 245 MNDGCQWRKYGQKISKGNPCPRAYYRCTVApSCPVRKQVQRCAQDMSILMTTYEGNHNHP 304
                          58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-30230306IPR003657WRKY domain
PROSITE profilePS5081128.059240306IPR003657WRKY domain
SuperFamilySSF1182902.48E-26240306IPR003657WRKY domain
SMARTSM007741.4E-35245305IPR003657WRKY domain
PfamPF031069.8E-26246304IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MEFGSERSGH EVKDEKRSES SVGDEEDRRE QEIITQEPPL STTERSTVEV GPNASSLTKK  60
EEAVDELETA KAEMGEVMEE NQRLKTCLSR ILNDYRTLQM QFHNRVEQET KDSSDQKVNN  120
NNDHQREESD LVSLSLGRLP TRNNEKVNNK PLKEEEKEDK EGLSLGLDCK FETSKSGSTT  180
EHLPNQSPNN SVEEVPKEEA AGESWPQRKG HKTARDTTGE DEVSQQNPAK KARVCVRARC  240
GTATMNDGCQ WRKYGQKISK GNPCPRAYYR CTVAPSCPVR KQVQRCAQDM SILMTTYEGN  300
HNHPLPLSAT AMASTISAAA SMLLSGSSTS HSGSRPSTAM TTAASYQTVP NQSNTYLSHP  360
AALSSSPSHP TITLDLTSNN NPSSSSVPLV KFTSNSTFNN PQRYPLSTSL NFSYSESNNA  420
TSWSNNGFLS YNNTLPYNSN RNVTNVLSNI NLGKQQQRPL ENIYNSYLQR NNNINPIPPP  480
QHSLPDTIAA ATKVITADPN CQSALAAALT TIIGSGTGNT TQGSHGAARK T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-212453061777Probable WRKY transcription factor 4
2lex_A3e-212453061777Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, trichomes and fruits. {ECO:0000269|PubMed:24884371}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269|PubMed:20409007, ECO:0000269|PubMed:24884371}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G173500.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269|PubMed:20409007}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2361730.0AC236173.2 Glycine max clone GM_WBb0081G04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003528183.10.0probable WRKY transcription factor 61
RefseqXP_028237211.10.0probable WRKY transcription factor 61
SwissprotA0A3Q7GFB51e-116WK72A_SOLLC; WRKY transcription factor 72A
TrEMBLK7KKR20.0K7KKR2_SOYBN; Uncharacterized protein
STRINGGLYMA04G34220.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65034134
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.11e-61WRKY DNA-binding protein 72
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Spyropoulou EA,Haring MA,Schuurink RC
    RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters.
    BMC Genomics, 2014. 15: p. 402
    [PMID:24884371]