PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G169900.1.p
Common NameGLYMA_04G169900, GLYMA_06G193700, LOC100785967, LOC100794835
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ZF-HD
Protein Properties Length: 90aa    MW: 9582.8 Da    PI: 8.855
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G169900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer101.94.3e-322077260
          ZF-HD_dimer  2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60
                         +++rY eC+kNhAa++Gg+avDGC+Efm+s + eg   al+CaACgCHRnFHRrev++e
  Glyma.04G169900.1.p 20 RNIRYGECQKNHAANIGGYAVDGCREFMAS-TGEGAGGALTCAACGCHRNFHRREVNTE 77
                         579**************************9.667899******************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257743.0E-22186IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047707.9E-292274IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015665.8E-262374IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.2572473IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048509Biological Processregulation of meristem development
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MKKRQVVVKS VANTSSSVMR NIRYGECQKN HAANIGGYAV DGCREFMAST GEGAGGALTC  60
AACGCHRNFH RREVNTEVVC EYSPPNSGR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.5661e-152epicotyl| hypocotyl
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in roots, stems and flowers, present in seedlings and leaves, and weakly observed in inflorescence and siliques. {ECO:0000269|PubMed:16412086, ECO:0000269|PubMed:18713354}.
Functional Description ? help Back to Top
Source Description
UniProtInhibits zinc finger homeodomain (ZHD) transcription factors by interacting with them to prevent both their nuclear localization and their DNA-binding properties. Involved in integrating signals from multiple hormones by regulating the expression of specific genes. Promotes the formation of ectopic shoot meristems on leaf margins. {ECO:0000269|PubMed:21455630}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G169900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150359e-93AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003522326.13e-60mini zinc finger protein 3
RefseqXP_014632621.13e-60mini zinc finger protein 3
RefseqXP_028229098.13e-60mini zinc finger protein 3-like
RefseqXP_028237252.13e-60mini zinc finger protein 3-like
SwissprotQ2Q4937e-40MIF3_ARATH; Mini zinc finger protein 3
TrEMBLA0A0B2RJL36e-59A0A0B2RJL3_GLYSO; Mini zinc finger protein 3
TrEMBLI1JWV26e-59I1JWV2_SOYBN; Uncharacterized protein
STRINGGLYMA04G33640.11e-59(Glycine max)
STRINGGLYMA06G20810.11e-59(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF155034100
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18835.11e-33mini zinc finger