PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G167200.1.p
Common NameGLYMA_04G167200
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 358aa    MW: 40474.5 Da    PI: 8.7622
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G167200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM182.88.2e-57181431128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdeel+++yL +kv+++++++ ++i evd++++ePwdLp k+k +ekewyfF+ rd+ky+tg r+nrat+sgyWkatgkdk
  Glyma.04G167200.1.p  18 LPPGFRFHPTDEELISHYLYRKVTHTNFSA-RAIGEVDLNRSEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATQSGYWKATGKDK 106
                          79**************************99.89***************888999************************************ PP

                  NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          e+++ +++lvg+kktLvfykgrapkgektdWvmheyrl
  Glyma.04G167200.1.p 107 EIFR-GKSLVGMKKTLVFYKGRAPKGEKTDWVMHEYRL 143
                          ****.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-6512168IPR003441NAC domain
PROSITE profilePS5100559.92718168IPR003441NAC domain
PfamPF023658.5E-3019143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MENVSVLLCN KEKDQMDLPP GFRFHPTDEE LISHYLYRKV THTNFSARAI GEVDLNRSEP  60
WDLPWKAKMG EKEWYFFCVR DRKYPTGLRT NRATQSGYWK ATGKDKEIFR GKSLVGMKKT  120
LVFYKGRAPK GEKTDWVMHE YRLDGKFSVH NLPKTAKNEW VICRVFQKSS GVKRTHISGM  180
MMLDSYGNEL GYSSSALPPL TDSSPSIDNT KVLSVTDTAY VPCFSNPIDA PRGIFDSLNN  240
INITTTTTTN NNNTLYGVSS NHSFYNTQLH IPPTLPLPSS SNHYLRAFLE NQGNGSNMRN  300
NGYETEREMV SVSQETTIST DVNAEISSLG KRQFENQQNP TASSAVVPMD VATLWNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A7e-561517417174NAC domain-containing protein 19
3swm_B7e-561517417174NAC domain-containing protein 19
3swm_C7e-561517417174NAC domain-containing protein 19
3swm_D7e-561517417174NAC domain-containing protein 19
3swp_A7e-561517417174NAC domain-containing protein 19
3swp_B7e-561517417174NAC domain-containing protein 19
3swp_C7e-561517417174NAC domain-containing protein 19
3swp_D7e-561517417174NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.268580.0seed coat
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G167200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX3924000.0JX392400.1 Glycine max NAC domain protein (NLP) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001276221.20.0NAC domain-containing protein
RefseqXP_028229071.10.0NAC domain-containing protein 100-like
SwissprotQ9FLJ21e-137NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A0B2R0R50.0A0A0B2R0R5_GLYSO; NAC domain-containing protein 100
TrEMBLI1JWT30.0I1JWT3_SOYBN; Uncharacterized protein
STRINGGLYMA04G33270.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40934171
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.11e-137NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]