PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.04G166900.1.p | ||||||||
Common Name | GLYMA_04G166900, Glyma04g33210.1, LOC100775267 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 387aa MW: 42552.7 Da PI: 7.658 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.3 | 7.1e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT +Ed++l+ +++++G+g+W+t +++ g++R++k+c++rw++yl Glyma.04G166900.1.p 14 KGAWTVQEDQKLITYIQKHGTGSWRTLPQKAGLKRCGKSCRLRWFNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 47.9 | 3e-15 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ ++eE++ ++++ + lG++ W++Ia++++ Rt++++k++w++yl Glyma.04G166900.1.p 67 RGKLSQEEEQTIIKLRAVLGNR-WSSIAKHLP-MRTDNEIKNYWNSYL 112 7999******************.*********.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-23 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.514 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.17E-27 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.04E-10 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-23 | 65 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.8E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.128 | 66 | 116 | IPR017930 | Myb domain |
Pfam | PF00249 | 3.0E-14 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.49E-11 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 387 aa Download sequence Send to blast |
MGRTPCCSHE ELRKGAWTVQ EDQKLITYIQ KHGTGSWRTL PQKAGLKRCG KSCRLRWFNY 60 LRPDIKRGKL SQEEEQTIIK LRAVLGNRWS SIAKHLPMRT DNEIKNYWNS YLKKQFEKNA 120 VDPSSSKPNS TDSSSESKSN DTCMVPSEKT DCHEPNTSQS HQHNLSRSIS SSTHLLNKVA 180 SKILASGYLE LIKSCQPVVA GNSKSESVVK TGIGLESDNI RDPLEPNLTS PSHSITSAKL 240 LNKMATSLPH KVHGLEAAKA VFSKLMENSE KGATASDDSF VGGCLNALSP FEDKPHITKT 300 IDSPSGPTLM FNHVTTPSCF SEDNEDNWQC VSSNYVSFKI CAANGGDCSV SEINLGESSS 360 STSSFLFENA DLGTCDDEIS KYIQYL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-29 | 11 | 117 | 4 | 109 | B-MYB |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.52896 | 0.0 | leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.04G166900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031189 | 0.0 | KT031189.1 Glycine max clone HN_CCL_77 MYB/HD-like transcription factor (Glyma04g33210.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003522319.1 | 0.0 | transcription repressor MYB6 | ||||
Refseq | XP_028229070.1 | 0.0 | transcription repressor MYB6-like | ||||
TrEMBL | A0A0B2PAS0 | 0.0 | A0A0B2PAS0_GLYSO; Transcription factor MYB16 | ||||
TrEMBL | I1JWT0 | 0.0 | I1JWT0_SOYBN; MYB/HD-like transcription factor | ||||
STRING | GLYMA04G33210.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16999 | 6 | 8 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15310.2 | 1e-61 | myb domain protein 16 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.04G166900.1.p |
Entrez Gene | 100775267 |
Publications ? help Back to Top | |||
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