PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G161400.1.p
Common NameGLYMA_04G161400, LOC100788984
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TCP
Protein Properties Length: 388aa    MW: 42974.9 Da    PI: 9.9106
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G161400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP90.34.2e-2852139383
                  TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......ssssaseceaesssssas 83 
                          g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl++ k  i++l+ +       ++++++   + ++ss+as
  Glyma.04G161400.1.p  52 GGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLGLSQPSKVIDWLLEATKFDIDKLPPLqfpqgfgQFQHPQTLLPFHDSSAAS 139
                          79*************************************************************5555555333332222222222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.28753111IPR017887Transcription factor TCP subgroup
PfamPF036342.6E-2653172IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MIMMMASSRE GRQAKQEGDT TNIDKFSQAS STSRQWSAFR NPRIVRVSRS FGGKDRHSKV  60
CTIRGLRDRR IRLSVPTAIQ LYDLQDKLGL SQPSKVIDWL LEATKFDIDK LPPLQFPQGF  120
GQFQHPQTLL PFHDSSAASH QLSLGPFCDA SSTFVRDGGI QNLMAKSRYW ENIDSMSRLR  180
GNKEAEKGKW IKTSEQENHD QDGVVGGYNS LQVSTQRLFP MRSSSTTTTT THSLLPGLFN  240
NSMPYNSYNS EPSSLSLSQF GSHGLFPTQQ VDPNPSSGNN GVQFQSSFPL PSSGSQLFFG  300
SSSATPSMFT TYAPFIAPSV DTDPRQFNHI QFLNSGSHIL PHPPLIPSLH HSFNSHVRPF  360
PEAPFSSKLL DSNSSNRSQE NHKGSTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-1858112155Putative transcription factor PCF6
5zkt_B5e-1858112155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00065PBMTransfer from AT5G60970Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G161400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003522291.20.0transcription factor TCP5
RefseqXP_028228995.10.0transcription factor TCP5-like
TrEMBLA0A445L0Y50.0A0A445L0Y5_GLYSO; Transcription factor TCP5
TrEMBLK7KKH40.0K7KKH4_SOYBN; Uncharacterized protein
STRINGGLYMA04G32324.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.12e-42TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5