PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.04G158800.1.p | ||||||||
Common Name | GLYMA_04G158800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 342aa MW: 37305.6 Da PI: 7.7497 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 122.6 | 1.3e-38 | 31 | 90 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 + +kcprCds ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk+k+s+ Glyma.04G158800.1.p 31 QPPIKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKSKRSN 90 6679****************************************************9975 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 7.1E-33 | 33 | 88 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 3.0E-26 | 34 | 88 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.571 | 34 | 88 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 36 | 72 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 342 aa Download sequence Send to blast |
MQEIHSIGGG RFFGGGGDRR LRPHHQNHHQ QPPIKCPRCD SLNTKFCYYN NYNLSQPRHF 60 CKNCRRYWTK GGVLRNVPVG GGCRKSKRSN KPKTTTSAAA TTSSNNNNNN PSSSSETAAA 120 TAPTPPQQPP PPLELEHNSH SHSSSESSTY TVAATEAMSA PTTNAVSNNN LLLDNNRESK 180 MFANPNPYLE QSRSGGLFSD IESFSSLVNL NNQALGFGFG NNNSNISILD ATSFRFGVSV 240 TNPHGNDQVL AAPGGGHGQW QQQQQNHHEF GTASFLDHTV PLEFSSLQHK AGHQGGFGPL 300 DWQPGGDQGL FDLPNTVDQP YWTHHTHWSD QDNPSSLFHL P* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 8 | 16 | GGRFFGGGG |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Gma.25807 | 0.0 | cotyledon| root |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.04G158800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | DQ857273 | 0.0 | DQ857273.1 Glycine max Dof22 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001236806.2 | 0.0 | Dof22 | ||||
Refseq | XP_028228972.1 | 0.0 | dof zinc finger protein DOF5.4-like | ||||
TrEMBL | A0A445L0X0 | 0.0 | A0A445L0X0_GLYSO; Dof zinc finger protein DOF5.4 | ||||
TrEMBL | I1JWL7 | 0.0 | I1JWL7_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA04G31690.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5998 | 30 | 50 | Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60850.1 | 2e-34 | OBF binding protein 4 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.04G158800.1.p |