PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G152400.1.p
Common NameGLYMA_04G152400, LOC100784394
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TCP
Protein Properties Length: 386aa    MW: 44174.8 Da    PI: 6.753
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G152400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP129.82.7e-401242772135
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........ssssasec........ 73 
                          +gk+drhski T++g+RdRR+Rls+e+a+rfF Lqd+L fdk+skt+eWLl+qak +i  l++           +ss++sec        
  Glyma.04G152400.1.p 124 PGKRDRHSKINTARGLRDRRMRLSLEVAKRFFGLQDMLNFDKASKTVEWLLNQAKVEINRLVKEkkkndhhhqsCSSASSECeegvssld 213
                          79**************************************************************99988888875555566666665544 PP

                  TCP  74 ....eaesssssasnsssgkaaksaa.kskksqksaasalnlakesrakarararertrekmriknk 135
                              + +++++++   +++++ ++    + k++++ +++  lake r++ar+rarertrekmr + +
  Glyma.04G152400.1.p 214 evvvSRDQEQQQQ---QQQEKVEKVVkRRVKNSRKISAFDPLAKECRERARERARERTREKMRSRGV 277
                          3222222222222...2222333333356666677777899999******************99866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.4E-44125274IPR005333Transcription factor, TCP
PROSITE profilePS5136932.352126184IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.756254271IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MQSQSSDTFP SHNGNDPISC YDPAFYYYNS RPFSPIDSES NPTSKQDNNN NCDLVPSPTP  60
LSFFHFPSSP FEDTQNQILL EQHHDFLLQF HHQSLPKDPV PQPAVITTMD PFVKKSDQIQ  120
RKRPGKRDRH SKINTARGLR DRRMRLSLEV AKRFFGLQDM LNFDKASKTV EWLLNQAKVE  180
INRLVKEKKK NDHHHQSCSS ASSECEEGVS SLDEVVVSRD QEQQQQQQQE KVEKVVKRRV  240
KNSRKISAFD PLAKECRERA RERARERTRE KMRSRGVLAE ESKQCGEETN QDLIQLGSSN  300
PFETGDQESG AKTSHSVDVH PSSLDVIATE AKEQSYRAVK EHNDDDDDSL VVLSKWSPSL  360
IFNNSGFSQD HQFAEFQSLG KPWET*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1258270RARERARERTREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G152400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003524020.10.0transcription factor DICHOTOMA
RefseqXP_025984031.10.0transcription factor DICHOTOMA
TrEMBLK7KK450.0K7KK45_SOYBN; Uncharacterized protein
STRINGGLYMA04G22407.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65642851
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.22e-26TCP family protein