PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G148800.1.p
Common NameGLYMA_04G148800
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 439aa    MW: 49802.5 Da    PI: 5.29
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G148800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.32.4e-10369418248
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                          ++W++ E+e l+ av ++G g+Wk+I        + Rt+ ++k++w++ +
  Glyma.04G148800.1.p 369 KKWSQLEEETLKTAVDKFGRGNWKLILDSHKdifEERTEVDLKDKWRNMR 418
                          58********************************9************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.7E-11363417IPR009057Homeodomain-like
PROSITE profilePS5129411.32363422IPR017930Myb domain
SuperFamilySSF466892.26E-13365419IPR009057Homeodomain-like
SMARTSM007175.5E-5367420IPR001005SANT/Myb domain
CDDcd116601.67E-16369418No hitNo description
PfamPF002492.3E-8369417IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MEGGDVGHWV LEFLLRARYP VVSSNLLKKV LRIVPLSDFD SRLQKTLLLR TLQDHLFAVS  60
VPESVLETLE LLEELHRRDD GALITAAAMS AAYCAIAVDC TLKHLLVELH NNPAYLGAVN  120
RIWRGRVRHM SGSREGSLLL SLELERWRTD IETSLLDSLV RERLASIDTR RDAVVKLRDY  180
LMEAWTDLGP SFLELAALAQ INKNALAVNY LEDSQQPERE IEKCTAAPAE EVHTSTDAEV  240
QKVGECGSVE LQKLAEDSLL NSLEVNEEAP IESRDADVPC PLVINNNNNE ADLMEKDQTS  300
IPHNHDHKSS LMERNSTARI YEWDDSIDGL EDGTSDHATR FNLPSPKWRE VSPLDKYKPA  360
SITKRRKVKK WSQLEEETLK TAVDKFGRGN WKLILDSHKD IFEERTEVDL KDKWRNMRLI  420
ILVHTTQYKP STLKTAQA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.615450.0seed coat
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G148800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2353130.0AC235313.1 Glycine max strain Williams 82 clone GM_WBb0072N12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006578437.10.0telomeric repeat-binding factor 2 isoform X1
RefseqXP_028228888.10.0telomeric repeat-binding factor 2-like isoform X1
TrEMBLA0A0R0K8U10.0A0A0R0K8U1_SOYBN; Uncharacterized protein
STRINGGLYMA04G18431.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28243260
Representative plantOGRP15031424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.12e-14TRF-like 5