PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G141700.1.p
Common NameGLYMA_04G141700
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 105aa    MW: 12490.3 Da    PI: 10.4622
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G141700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.23.2e-071348148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT eEd ll+ +vk +G +            R +k+c++rw +yl
  Glyma.04G141700.1.p 13 KGPWTSEEDRLLILYVKFHGLK------------RNGKSCRLRWVNYL 48
                         79******************55............67799999999997 PP
2Myb_DNA-binding34.74.2e-115594247
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         g  T++E+ +++++++    + W+tIar ++ gRt++++k++w+++
  Glyma.04G141700.1.p 55 GQITPQEESIILELHA----R-WSTIARSLP-GRTDNEIKNYWRTH 94
                         5567777777777775....6.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007176.8E-51250IPR001005SANT/Myb domain
SuperFamilySSF466895.99E-221396IPR009057Homeodomain-like
PfamPF002496.4E-61348IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-141455IPR009057Homeodomain-like
PROSITE profilePS5129416.9724999IPR017930Myb domain
SMARTSM007171.2E-65397IPR001005SANT/Myb domain
PfamPF002491.1E-85494IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-205699IPR009057Homeodomain-like
CDDcd001679.13E-85895No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 105 aa     Download sequence    Send to blast
MGWGVIEEEG WRKGPWTSEE DRLLILYVKF HGLKRNGKSC RLRWVNYLRP DLEKGQITPQ  60
EESIILELHA RWSTIARSLP GRTDNEIKNY WRTHFKKKIR AHFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-2213997108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mainly expressed in leaves and seedlings, and to a lower extent, in roots, stems and inflorescences. Isoform MYB48-1, isoform MYB48-3 and isoform MYB48-4 are present in all of these organs, but isoform MYB48-2 is confined to leaves. {ECO:0000269|PubMed:16531467}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G141700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0970475e-67BT097047.1 Soybean clone JCVI-FLGm-15J22 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014632633.15e-66myb-related protein 305
SwissprotQ9LX822e-38MYB48_ARATH; Transcription factor MYB48
TrEMBLA0A0R0KFL01e-70A0A0R0KFL0_SOYBN; Uncharacterized protein
STRINGGLYMA04G26650.12e-65(Glycine max)
STRINGGLYMA06G38340.12e-65(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118234108
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.13e-53myb domain protein 305
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]