PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.04G136700.1.p

Common Name

GLYMA_04G136700, LOC100806835

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

SRS

Protein Properties

Length: 333aa MW: 35377.4 Da PI: 8.1854

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.04G136700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	181.8	2.9e-56	135	287	7	153
DUF702 7 sCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaes 96 CqdCGn+akkdC+++RCRtCCk rg+dC+thvkstW+p+ +rrer + a+ + kr+r ++q+a+s+++ s+a++ Glyma.04G136700.1.p 135 VCQDCGNRAKKDCVFRRCRTCCKGRGYDCNTHVKSTWIPSVRRREREITVASG----GGVGGNGGCKRPRAVVGSSQNATSHSSNSNATT 220 6******************************************97766664....333467788888888888888888888888888 PP DUF702 97 kkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 +k+l tss lP +v+++avf+c rvs++ +ge+e+aY ++v+i+GhvfkG+Lyd+G++ Glyma.04G136700.1.p 221 PKSLATSSfhqdasfkqsLPGHVRAPAVFKCHRVSAIGNGEDEFAYLATVQISGHVFKGFLYDHGVD 287 888888888888888999*********************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01623	6.0E-26	135	177	IPR006510	Zinc finger, lateral root primordium type 1
Pfam	PF05142	1.3E-53	135	287	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01624	6.0E-24	239	286	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MSMLGLRDLV LIAQTPSSLH HQHQGQPISE NQTHTHTPNL PLPSSAASLS VGFGIFPLLT 60 ATPCVPQPHQ NNEVQECGGG GANSNTTTTN YWNLKMCQEV NNPPKKGVIN VADHDDEKGV 120 MESEENGVYG PDFRVCQDCG NRAKKDCVFR RCRTCCKGRG YDCNTHVKST WIPSVRRRER 180 EITVASGGGV GGNGGCKRPR AVVGSSQNAT SHSSNSNATT PKSLATSSFH QDASFKQSLP 240 GHVRAPAVFK CHRVSAIGNG EDEFAYLATV QISGHVFKGF LYDHGVDGKT ANVVPCVSEL 300 QLGNNCSGKN RECSSAIAIG VANNNAYPAS AS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.04G136700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235897	0.0	AC235897.2 Glycine max clone GM_WBc0123J08, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006578434.1	0.0	protein LATERAL ROOT PRIMORDIUM 1
Refseq	XP_028228778.1	0.0	protein LATERAL ROOT PRIMORDIUM 1-like
Refseq	XP_028228779.1	0.0	protein LATERAL ROOT PRIMORDIUM 1-like
TrEMBL	A0A445KZZ3	0.0	A0A445KZZ3_GLYSO; Protein LATERAL ROOT PRIMORDIUM 1 isoform A
TrEMBL	K7KK00	0.0	K7KK00_SOYBN; Uncharacterized protein
STRING	GLYMA04G17885.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5704	31	54
Representative plant	OGRP1313	15	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	3e-49	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	Glyma.04G136700.1.p
Entrez Gene	100806835