PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.04G126200.1.p

Common Name

GLYMA_04G126200

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

HB-other

Protein Properties

Length: 269aa MW: 30088.9 Da PI: 7.1097

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.04G126200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.2	6.7e-19	25	80	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kR t+ ql++Le+++++++yp++e++ LA++lgLte+q++ WF+ rR k+k+ Glyma.04G126200.1.p 25 KKRKLKTPAQLKALENFYNEHKYPTEEMKLVLAEELGLTEKQISGWFCHRRLKDKR 80 89****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.5E-20	12	80	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.03E-18	21	85	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.957	21	81	IPR001356	Homeobox domain
SMART	SM00389	1.2E-19	23	85	IPR001356	Homeobox domain
CDD	cd00086	1.45E-18	25	80	No hit	No description
Pfam	PF00046	1.9E-16	25	80	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MEQPPNLWTF ELQSEENKVS NEKNKKRKLK TPAQLKALEN FYNEHKYPTE EMKLVLAEEL 60 GLTEKQISGW FCHRRLKDKR LMKDEAVANG RQDRSSGVIQ DRGSGLGQDS CGSSKHADHR 120 YLDPKEVESH GLYNHELSVA DMTHGCRNQR LFSQGLDPYD MEPSRHLTPN GALPPLNPKG 180 AINMGHKPSG YLKVKGEIEH AAITAVKKQL GRHYLEDGPL LGIEFDLLPP GAFECQTADP 240 ANEPYSATNP LLLNSPEISA AKRQPSISS

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.18475	0.0	cotyledon\| flower\| root\| somatic embryo

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.04G126200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015036	1e-111	AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003545402.1	0.0	uncharacterized protein LOC100803515
Refseq	XP_028201159.1	0.0	uncharacterized protein LOC114385327
TrEMBL	A0A0R0KE85	0.0	A0A0R0KE85_SOYBN; Uncharacterized protein (Fragment)
STRING	GLYMA14G03850.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5792	30	51
Representative plant	OGRP8823	8	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	4e-73	HB-other family protein

Link Out ? help Back to Top
Phytozome	Glyma.04G126200.1.p