PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.04G125700.1.p | ||||||||
Common Name | GLYMA_04G125700, LOC100792349 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 511aa MW: 56418.3 Da PI: 4.9473 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.6 | 1.2e-17 | 35 | 82 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed llv++v+++G g+W+++ ++ g+ R++k+c++rw ++l Glyma.04G125700.1.p 35 KGPWTAAEDVLLVNYVQKHGEGNWNAVQKYSGLSRCGKSCRLRWANHL 82 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 46.3 | 1e-14 | 88 | 131 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE+ ++++++++G++ W++ a+++ gRt++++k++w++ Glyma.04G125700.1.p 88 KGAFTAEEERMIAELHAKMGNK-WARMAAHLH-GRTDNEIKNYWNT 131 799*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.342 | 30 | 82 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.4E-30 | 33 | 129 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.0E-15 | 34 | 84 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.8E-16 | 35 | 82 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-23 | 36 | 89 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.78E-11 | 37 | 82 | No hit | No description |
PROSITE profile | PS51294 | 23.415 | 83 | 137 | IPR017930 | Myb domain |
SMART | SM00717 | 9.5E-15 | 87 | 135 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.8E-14 | 88 | 131 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.8E-25 | 90 | 136 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.42E-10 | 90 | 131 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 511 aa Download sequence Send to blast |
MSQMTNEINY NVHCNDQTGS QLNDEGNGVG MVLKKGPWTA AEDVLLVNYV QKHGEGNWNA 60 VQKYSGLSRC GKSCRLRWAN HLRPNLKKGA FTAEEERMIA ELHAKMGNKW ARMAAHLHGR 120 TDNEIKNYWN TRMKRRQRAG LPLYPPEVLL QAFQERKHGQ GTGEISNGDG GHHDFLKKNN 180 YEIHDAIFDS LKENQGILPF LPDLPAISAN SFLPNCLGSP PYCNFLPSTL PNHDHFQEST 240 MSFIGSSELN SNEFYPFDRI KDNNSDKISE SFGLYSPLDR GASSHGSICY SHSLSNGNSS 300 TSKLISEAAK SELPSLQIPE TEFGCWGTSP PPPLNESLDV FIHSPQPPNA LDSGSSPLNS 360 GLLDALLYQA NTLGCSKNNS SDKSLNSSIA TPGDRAESSA LNMYETEWED YADPLSPFGA 420 TSILNEHPVV STNGNSWDDW ELFQTFSGNN ERLQSVDQVW APKSGNQSMS LLNLTLPDVL 480 ITSDWHELYS DHDSMNQAVM TEASDDISGQ * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 7e-30 | 32 | 136 | 1 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 7e-30 | 32 | 136 | 1 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.04G125700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC187165 | 0.0 | AC187165.17 Glycine max cultivar Williams 82 clone gmw2-91b16, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028228692.1 | 0.0 | transcription factor MYB33-like isoform X2 | ||||
TrEMBL | A0A0B2SMT9 | 0.0 | A0A0B2SMT9_GLYSO; Transcription factor GAMYB | ||||
TrEMBL | K7KJR9 | 0.0 | K7KJR9_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA04G15150.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2047 | 34 | 85 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06100.3 | 1e-96 | myb domain protein 33 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.04G125700.1.p |
Entrez Gene | 100792349 |