PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G111200.9.p
Common NameGLYMA_04G111200, LOC100787741
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 237aa    MW: 27525.8 Da    PI: 9.2308
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G111200.9.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR185.58.3e-2772160290
                 FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                          fY+eYA+++GF +r+ + ++s+r+g+i  r++ C+keg+  + + k  + r++ra+tr gCka++++k +k+gkw++tk++++HnH+l+
  Glyma.04G111200.9.p  72 FYDEYARRLGFVMRVMSCRRSERDGRILARRLGCNKEGYCVSIRGKFASVRKPRASTREGCKAMIHIKYDKSGKWVITKFVKDHNHPLV 160
                          9**************************************999999989***************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.8E-2572160IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0010018Biological Processfar-red light signaling pathway
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MRKMLSPAIF ILIIRKHSDG FKRFNFVAVD PNEGCRVLES SSWGELGICE DHAIQEPYEG  60
MEFESEDAAK LFYDEYARRL GFVMRVMSCR RSERDGRILA RRLGCNKEGY CVSIRGKFAS  120
VRKPRASTRE GCKAMIHIKY DKSGKWVITK FVKDHNHPLV VSPREARQTM DEKDKKIQEL  180
TAELRLKKRL CATYQEQLTS FMKIVEEHNE KLSAKIHHVV NNLKEFESIE ELLHQT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.602250.0cotyledon| somatic embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G111200.9.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150401e-180AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014630094.11e-177protein FAR1-RELATED SEQUENCE 2 isoform X2
RefseqXP_014630095.11e-177protein FAR1-RELATED SEQUENCE 2 isoform X2
RefseqXP_028228556.11e-177protein FAR1-RELATED SEQUENCE 2-like isoform X3
TrEMBLA0A0R0KE551e-175A0A0R0KE55_SOYBN; Uncharacterized protein
TrEMBLA0A445KYR91e-175A0A445KYR9_GLYSO; Protein FAR1-RELATED SEQUENCE 5 isoform F
STRINGGLYMA04G12273.11e-154(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43280.11e-107FAR1 family protein