PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.04G110100.1.p | ||||||||
Common Name | GLYMA_04G110100, LOC102666249 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 322aa MW: 36579.4 Da PI: 9.6796 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.3 | 2e-14 | 189 | 235 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+ Ed l+++v+q+G + W+ Ia+ + Rt+kqc++rw+++l Glyma.04G110100.1.p 189 KGKWSMKEDRDLIELVNQYGLKKWSQIAKLLH-CRTGKQCQERWNNHL 235 79******************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 42.4 | 1.6e-13 | 241 | 283 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++WT Ed+++++ + + G++ W+ Ia++++ gR ++ +k+rw+ Glyma.04G110100.1.p 241 KDSWTLKEDKIFIETHIKVGNK-WSEIAKMLP-GRAPNTIKNRWN 283 679*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.586 | 184 | 239 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.24E-28 | 186 | 282 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-12 | 188 | 237 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-24 | 190 | 243 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.02E-13 | 191 | 235 | No hit | No description |
Pfam | PF13921 | 1.9E-16 | 192 | 250 | No hit | No description |
PROSITE profile | PS51294 | 16.237 | 240 | 290 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1E-10 | 240 | 288 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.20E-8 | 243 | 283 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-17 | 244 | 289 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MEFDPSFKGP QYLSSLFPRN SYLKPLTQTI FPSQSSIFTP PPPSSVMFHP NNNSHHFQDH 60 IMNVPTNSTP FVMEGPSNPI TTPMYGITTP SLGDGSSLGG FVNVQCHPPM MLAPNNNNKM 120 EALYGQDKGK AISDFSQKTM LCSSEDSSSK SPSPFSLPND WWMSQYHWDT DQKVKVEKDS 180 NIGNDNVIKG KWSMKEDRDL IELVNQYGLK KWSQIAKLLH CRTGKQCQER WNNHLQPNIR 240 KDSWTLKEDK IFIETHIKVG NKWSEIAKML PGRAPNTIKN RWNGSKRRKN DKRQNKNKHG 300 PYDGSVLDAY VKMVTATEET T* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-36 | 183 | 291 | 1 | 109 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.04G110100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006576590.2 | 0.0 | transcription factor MYB3R-2 | ||||
TrEMBL | A0A0R0K6Z5 | 0.0 | A0A0R0K6Z5_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA03G15930.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14336 | 10 | 18 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58850.1 | 1e-39 | myb domain protein 119 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.04G110100.1.p |
Entrez Gene | 102666249 |