PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.04G103900.1.p | ||||||||
Common Name | GLYMA_04G103900, Glyma04g11290.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 315aa MW: 34794.9 Da PI: 7.195 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.6 | 9.6e-21 | 138 | 187 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ kl+g Glyma.04G103900.1.p 138 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYKLRG 187 59******9.**********965...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.06E-34 | 137 | 197 | No hit | No description |
PROSITE profile | PS51032 | 23.143 | 138 | 195 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.0E-38 | 138 | 201 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.8E-32 | 138 | 196 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.94E-23 | 138 | 196 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.9E-14 | 139 | 187 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-11 | 139 | 150 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-11 | 161 | 177 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MAAMMDFYSS STEFQLHSDP FRGELMEVLE PFMKSPFSTP SPSNSCFLST SYSPSPNNYS 60 PSLYSNGLSS IPNTTQNLIG FGQGQPTSLV GLNHLTPSQI SQIQAQIQIQ NHSNTLSFLG 120 PKPIPMKHVG MPPKPTKLYR GVRQRHWGKW VAEIRLPKNR TRLWLGTFDT AEEAALAYDK 180 AAYKLRGDFA RLNFPNLRHQ GSSVGGDFGE YKPLHSAVDA KLQAICEGLA ELQKQGKTEK 240 PPRKTRSKLA SPPENDNNND NNSCKVEAAS SSSEGSSPLS VLTFADVSEP QWEGDSDNFN 300 LQKYPSYEID WDSL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 7e-22 | 137 | 195 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.31189 | 0.0 | cotyledon| flower| hypocotyl| leaf| root| seed coat| somatic embryo| stem| vegetative bud |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in roots and leaves. Also detected in flowers and stems. {ECO:0000269|PubMed:9192694}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.04G103900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031076 | 0.0 | KT031076.1 Glycine max clone HN_CCL_183 AP2-EREBP transcription factor (Glyma04g11290.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001236953.2 | 0.0 | dehydration responsive element-binding protein 3 | ||||
Swissprot | Q8H1E4 | 4e-97 | RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4 | ||||
TrEMBL | A0A0K2CTG7 | 0.0 | A0A0K2CTG7_SOYBN; AP2-EREBP transcription factor (Fragment) | ||||
STRING | GLYMA04G11290.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1057 | 32 | 109 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78080.1 | 3e-68 | related to AP2 4 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.04G103900.1.p |
Publications ? help Back to Top | |||
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