PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G096300.1.p
Common NameGLYMA_04G096300, LOC100801328
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GATA
Protein Properties Length: 351aa    MW: 37868.4 Da    PI: 4.3969
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G096300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA46.84.1e-15200236135
                 GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C++Cg+ +  Tp +Rrgp g++tLCnaCGl+++ kg+
  Glyma.04G096300.1.p 200 CHHCGVGEnnTPAMRRGPAGPRTLCNACGLMWANKGT 236
                          ****998888************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009798.5E-76196IPR010399Tify domain
PROSITE profilePS5132012.8686196IPR010399Tify domain
PfamPF062001.2E-96495IPR010399Tify domain
PROSITE profilePS5101712.719129171IPR010402CCT domain
PfamPF062036.9E-15129170IPR010402CCT domain
SMARTSM004011.8E-10194247IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.23E-11194244No hitNo description
Gene3DG3DSA:3.30.50.102.5E-14198241IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.06E-15199243No hitNo description
PROSITE patternPS003440200227IPR000679Zinc finger, GATA-type
PfamPF003204.9E-13200236IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MATVNPQPLQ FEDPAIPVDD DDDDDDDGGD DDAMDELEDA NVNSVNVTNA ASVNHEAVVA  60
MPSRTSELTL SFEGEVYVFP AVTPQKVQAV LLLLGGRDVQ AGVPAVEPPF DQSNRDMGDT  120
PKRSNLSRRI ASLVRFREKR KERCFDKKIR YSVRKEVAQR MHRKNGQFAS LKESPGSSNW  180
DSAQSSGQVG TSHSESVRRC HHCGVGENNT PAMRRGPAGP RTLCNACGLM WANKGTLRDL  240
SKGGRNLSVE QSDLDTPIDV KPTSVLEGEL PGIHDEQGSS EDPSKSNAAD GSSNHAVNPS  300
DEELPETAEH FTNVLPLGIG HSSTNDSEQE PLVELSNPSD TDIDIPGNFD *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118123DTPKRS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.109580.0cotyledon| epicotyl| hypocotyl| leaf| meristem| root| somatic embryo| vegetative bud
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G096300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0934500.0BT093450.1 Soybean clone JCVI-FLGm-17E18 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003522771.10.0GATA transcription factor 24 isoform X1
SwissprotQ8GXL77e-70GAT24_ARATH; GATA transcription factor 24
TrEMBLI1JV870.0I1JV87_SOYBN; Uncharacterized protein
STRINGGLYMA04G10340.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33193364
Representative plantOGRP8311661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.26e-69ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]