PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G096200.1.p
Common NameGLYMA_04G096200, LOC100809517
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GATA
Protein Properties Length: 310aa    MW: 33838 Da    PI: 6.151
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G096200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.89.3e-16221257135
                 GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C++Cg ++  Tp++R+gp+g+++LCnaCGl+++ +g+
  Glyma.04G096200.1.p 221 CTHCGISSksTPMMRKGPSGPRSLCNACGLFWANRGT 257
                          *****99999***********************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.61585120IPR010399Tify domain
SMARTSM009792.9E-1385120IPR010399Tify domain
PfamPF062002.6E-1388119IPR010399Tify domain
PROSITE profilePS5101712.521152194IPR010402CCT domain
PfamPF062037.5E-16152194IPR010402CCT domain
PROSITE profilePS501149.803215264IPR000679Zinc finger, GATA-type
SMARTSM004012.0E-14215268IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.09E-11217266No hitNo description
Gene3DG3DSA:3.30.50.101.3E-14220262IPR013088Zinc finger, NHR/GATA-type
PfamPF003201.4E-13221257IPR000679Zinc finger, GATA-type
CDDcd002023.67E-15221265No hitNo description
PROSITE patternPS003440221248IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MFGSINQIVS AEDTDGPVSD HHIHYSSHTI EDDGAASDHH IHYSSHTIEE DGAASDHHIH  60
YSSHTIEDDG AAVEDVSAVP GPEISIDNSS QLTLSFRGQV YVFDAVTPDK VQAVLLLLGG  120
NELTSGSQCA ELSSRNQTGE EEYPAKCSLP HRAASLNRFR QKRKERCFDK KVRYSVRQEV  180
ALRMHRNKGQ FTSSKNQDGT NSWGSDQESG QDAVQSETLC CTHCGISSKS TPMMRKGPSG  240
PRSLCNACGL FWANRGTLRD LSKRNLEHSL TPPEQVDEGS NNNALDIRSG IPAQHNNLVN  300
DSKALVSDR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.570250.0leaf| somatic embryo
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:10945256, ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G096200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0968950.0BT096895.1 Soybean clone JCVI-FLGm-21G2 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003523794.10.0GATA transcription factor 25
SwissprotQ9LRH62e-82GAT25_ARATH; GATA transcription factor 25
TrEMBLI1JV860.0I1JV86_SOYBN; Uncharacterized protein
STRINGGLYMA04G10330.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28363368
Representative plantOGRP8311661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.21e-84GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]