PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G095300.1.p
Common NameGLYMA_04G095300, LOC100805773
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 614aa    MW: 66800.4 Da    PI: 7.3681
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G095300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.31.9e-09205250144
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrw 44 
                          r++W++eEd +l  av+++G g+W+t a+      +R++ q+  rw
  Glyma.04G095300.1.p 205 RKAWSEEEDMQLRAAVQRWGEGNWATMAKGDDfpIKRSATQLAQRW 250
                          789************************9865555559999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.943200258IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.9E-11202255IPR009057Homeodomain-like
SuperFamilySSF466891.94E-10203256IPR009057Homeodomain-like
SMARTSM007173.3E-9204256IPR001005SANT/Myb domain
PfamPF002493.1E-8205250IPR001005SANT/Myb domain
CDDcd116601.43E-11206255No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0031627Biological Processtelomeric loop formation
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 614 aa     Download sequence    Send to blast
MPEKKNKKVS FTEEDAVTLM QRYDATTVFT LLQEVAHYPH PKIDWCELVK KSATEISNAR  60
EYQMLWRHLA YRHSLPEIFE DGDEPLPHFQ DDDSDLECEL EAFPPVSVEC ASEAAACVKV  120
MIASRTLSES APSSSTIEAP LTINVPVCHS SRTPIENSQP SNLMQGTSII FPVTVQRQTL  180
PTISSTDGIE TKGIVGGNMA SKRKRKAWSE EEDMQLRAAV QRWGEGNWAT MAKGDDFPIK  240
RSATQLAQRW SILRKKDGCT NTGTITSTQY TTAEQLATRH SLSLALDMPF KKLTAPGMTD  300
VKPSTSVKNQ AQIRNTTEKV SSSLVPPQQP SQQALLGSSD LHAKSKLADE KPVLKGNLIS  360
DHVVKSATAT LGTRVDPLSN TISQIKVAQV KNATDTKPAV SSLTKPSIST NLPSDPKNKH  420
VTSLADKGAQ VKHAVDTKPA VSSLIKPSIS TNLPSDPKNK HVTPLADKVP LKQVVNPTKE  480
LKVSDPSTTP KEKVQENEPP KVTTGSQVDS SLEKGRFEKG LETSTPLVKI SCGEEVSKDK  540
ANPVVVCEEQ GSVKKATENN NIDKGSQNLD HDKKIDSINQ SSNDQNANDK HVNLPVQDEL  600
SLSAKVVKSD GEC*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.50950.0pod| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G095300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150351e-112AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014630054.10.0uncharacterized protein LOC100805773 isoform X1
TrEMBLK7KJ550.0K7KJ55_SOYBN; Uncharacterized protein
STRINGGLYMA04G10185.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31223256
Representative plantOGRP59231520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.17e-73MYB_related family protein