PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.04G094800.1.p

Common Name

GLYMA_04G094800

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

YABBY

Protein Properties

Length: 194aa MW: 21604.5 Da PI: 5.8166

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.04G094800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	194	7e-60	6	163	2	166
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnve 87 ++f+ +eq+Cy+qC+fC+til+vsvP +sl++vvtvrCGhCtsl+svn++kas +lla+ shl+ + + + +k+ +++ s+++ Glyma.04G094800.1.p 6 HLFDLPEQICYIQCGFCSTILMVSVPCSSLSMVVTVRCGHCTSLFSVNMSKASfipfHLLASLSHLEPKESSPEEDANKTLNSHSASMMT 95 7899*********************************************998888999999997654444433333333333333333 PP YABBY 88 keesastsvsseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPki 166 ++++ e++ +p ++ v++PPekrqr Psayn+fik ei+r+ka+nPd++h+eafs+aaknWa fP+ Glyma.04G094800.1.p 96 YSDCE------------EEDVIPMSHHvVNKPPEKRQRTPSAYNCFIKKEIKRLKAENPDMAHKEAFSTAAKNWANFPQT 163 33333............2333333333389**********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.0E-61	11	164	IPR006780	YABBY protein
SuperFamily	SSF47095	4.19E-9	109	163	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	5.5E-6	114	164	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MSTLNHLFDL PEQICYIQCG FCSTILMVSV PCSSLSMVVT VRCGHCTSLF SVNMSKASFI 60 PFHLLASLSH LEPKESSPEE DANKTLNSHS ASMMTYSDCE EEDVIPMSHH VVNKPPEKRQ 120 RTPSAYNCFI KKEIKRLKAE NPDMAHKEAF STAAKNWANF PQTQWCRGDE ESCSQTDQLV 180 NSQVDPPDAE VKA*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: First detected in a group of around 15 epidermal cells on the abaxial half of each ovule primordium (chalaza, outer integument initiation sites). Later present in the outer cell layer of the outer integument on the abaxial side of the ovule primordium. Confined to the chalazal end of the integument and disappears after anthesis. Also present in embryos at the globular stage. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:12183381}.

Functional Description ? help Back to Top
Source	Description
UniProt	Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:9093862, ECO:0000269\|PubMed:9118807}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.04G094800.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:12183381}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015043	2e-52	AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025983992.1	1e-143	axial regulator YABBY 4 isoform X3
Swissprot	Q9LDT3	1e-64	YAB4_ARATH; Axial regulator YABBY 4
TrEMBL	K7KJ48	1e-142	K7KJ48_SOYBN; Uncharacterized protein
STRING	GLYMA04G10125.1	1e-141	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6144	28	52
Representative plant	OGRP9612	7	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23420.1	4e-67	YABBY family protein

Link Out ? help Back to Top
Phytozome	Glyma.04G094800.1.p

Publications ? help Back to Top
Lora J,Hormaza JI,Herrero M Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT). New Phytol., 2015. 208(2): p. 584-95 [PMID:25991552] Skinner DJ,Brown RH,Kuzoff RK,Gasser CS Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function. BMC Plant Biol., 2016. 16(1): p. 143 [PMID:27350128] Simon MK,Skinner DJ,Gallagher TL,Gasser CS Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors. Genetics, 2017. 207(4): p. 1489-1500 [PMID:28971961]