PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.04G093300.1.p

Common Name

GLYMA_04G093300, LOC100794438

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

ZF-HD

Protein Properties

Length: 294aa MW: 31988.2 Da PI: 6.5531

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.04G093300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	94.9	6.8e-30	55	111	3	60
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 ++rY+eC+kNhA+s+Gg+avDGC+Ef+++ geegt +a+ CaAC+CHRnFHR+e + e Glyma.04G093300.1.p 55 TLRYRECQKNHAVSIGGQAVDGCCEFLAA-GEEGTLEAVICAACNCHRNFHRKEIDGE 111 689***********************9.999******************98865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	1.0E-19	54	110	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	1.8E-27	56	108	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	2.6E-26	57	108	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	26.487	58	107	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	1.64E-19	195	265	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.8E-31	198	267	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	7.4E-24	207	263	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MEFDEHEDQE EEEEEEMGFS VAAASYDSLG NAAVRSKMSG GEGVAVTGNS GRKGTLRYRE 60 CQKNHAVSIG GQAVDGCCEF LAAGEEGTLE AVICAACNCH RNFHRKEIDG ETSPYRQRSQ 120 PQPQPLHPQY HHQFSPYYHR APPPSAAGYL HHHLVTPPVS QHRPLALPPL ASGGVFSREE 180 EDMSNPSSSG GGGGFSGGGG GSGSGTKKRF RTKFTQEQKD KMLAFAEELG WRIQKHDEVA 240 VEQFCAETCV KRHVLKVWMH NNKHTLANSE QRSAGNGSNH LNSTTIIENS QLS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	2e-28	206	269	16	79	ZF-HD homeobox family protein
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	188	201	SGGGGGFSGGGGGS

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.60044	0.0	hypocotyl\| pod\| seed coat\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.04G093300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003522760.1	0.0	zinc-finger homeodomain protein 2 isoform X1
Refseq	XP_028228366.1	0.0	zinc-finger homeodomain protein 2-like isoform X1
Swissprot	Q6YXH5	2e-72	ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBL	A0A445KXY4	0.0	A0A445KXY4_GLYSO; Zinc-finger homeodomain protein 1 isoform A
TrEMBL	I1JV50	0.0	I1JV50_SOYBN; Uncharacterized protein
STRING	GLYMA04G09910.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF206	34	253
Representative plant	OGRP91	16	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	1e-62	homeobox protein 22

Link Out ? help Back to Top
Phytozome	Glyma.04G093300.1.p
Entrez Gene	100794438

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]