PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G085000.1.p
Common NameGLYMA_04G085000, LOC100815727
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 845aa    MW: 92741.1 Da    PI: 6.4262
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G085000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.26.5e-192078357
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                         k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Glyma.04G085000.1.p 20 KYVRYTPEQVEALERLYHECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 78
                         5679*****************************************************97 PP
2START171.65.1e-541683762205
                          HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..E CS
                START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..g 89 
                          +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  ++a  v+e+l+d++ W ++++ +++l+v s+g  g
  Glyma.04G085000.1.p 168 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCPGVAARACGLVGLEPA-RVAEILKDRLSWFRDCRTVDVLNVMSTGngG 256
                          7899******************************************************.9999999999********************* PP

                          EEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS
                START  90 alqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgr 175
                          +++l +++l+a+++l+p Rdf+ +Ry+  l++g++v++++S++++q+ p     +++vRa +l Sg+li+p+++g+s +++v+h+ l+ +
  Glyma.04G085000.1.p 257 TIELLYMQLYAPTTLAPgRDFWLLRYTSLLEDGSLVVCERSLNNTQNGPAmppVQHFVRADMLASGYLIRPCEGGGSIIHIVDHMVLEPW 346
                          ***********************************************99988899*********************************** PP

                          XXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
                START 176 lphwllrslvksglaegaktwvatlqrqce 205
                          +++++lr+l++s++  +++t++a+l+++++
  Glyma.04G085000.1.p 347 SVPEVLRPLYESSMLLAQRTTMAALRHLRQ 376
                          *************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.5971579IPR001356Homeobox domain
SMARTSM003891.3E-151783IPR001356Homeobox domain
SuperFamilySSF466893.68E-171983IPR009057Homeodomain-like
CDDcd000861.27E-162080No hitNo description
PfamPF000461.6E-162178IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.0E-182278IPR009057Homeodomain-like
CDDcd146861.16E-672111No hitNo description
PROSITE profilePS5084822.741158386IPR002913START domain
CDDcd088751.67E-75162377No hitNo description
SuperFamilySSF559611.79E-34167378No hitNo description
SMARTSM002343.5E-39167377IPR002913START domain
Gene3DG3DSA:3.30.530.206.8E-19167373IPR023393START-like domain
PfamPF018522.3E-51168376IPR002913START domain
PfamPF086701.6E-51703843IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010067Biological Processprocambium histogenesis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0010089Biological Processxylem development
GO:0045597Biological Processpositive regulation of cell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 845 aa     Download sequence    Send to blast
MMTVSSACKD GSKVALDNGK YVRYTPEQVE ALERLYHECP KPSSLRRQQL IRECPILSNI  60
EPKQIKVWFQ NRRCREKQRK EASRLQAVNR KLTAMNKLLM EENDRLQKQV SHLVYENSFF  120
RQQTHNNATL ATTDTNTSCE SVVTSGQRNL TPQQHPPRDA SPAGLLSIAE ETLAEFLSKA  180
TGTAVEWVQM PGMKPGPDSI GIVAISHGCP GVAARACGLV GLEPARVAEI LKDRLSWFRD  240
CRTVDVLNVM STGNGGTIEL LYMQLYAPTT LAPGRDFWLL RYTSLLEDGS LVVCERSLNN  300
TQNGPAMPPV QHFVRADMLA SGYLIRPCEG GGSIIHIVDH MVLEPWSVPE VLRPLYESSM  360
LLAQRTTMAA LRHLRQISQE VSQPSVTGWG RRPAALRALS QRLSKGFNEA VNGFADDGWS  420
MLESDGIDDV TLLVNSSPSK MMGVNLGYNN NGFPSVSSSL LCAKASMLLQ NVPPAILLRF  480
LREHRSEWAD SSIDAYSAAA IKAGPCSLPG ARPGGFGGQV ILPLAHTIEH EEFMEVIKLE  540
NMGYYRDDMN IPGDVFLLQL CSGVDEHAVG TSAELVFAPI DASFSDDAPI LPSGFRIIPL  600
DSGTDAASPN RTLDLASALE VGTTANKAAG DNSGHSGSTK SVMTIAFQFA FEVHLQENIA  660
TMARQYVRSI IASVQRVSLA LSPSRFGSHN AFHLPPGTPE AQTLARWICN SYRFYLGVEL  720
LKCEGSESIL KSLWHHSDAV LCCSLKALPV FTFANQAGLD MLETTLVALQ DITLEKIFDD  780
NGKKTLCTEF PQIMQQGFMC IQGGICLSSM GRPVSYERAV AWKVLNEEES AHCICFMFIN  840
WSFV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.422600.0cotyledon| epicotyl| hypocotyl| leaf| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the procambial cells and the developing vascular system of embryos, roots and shoots. Expressed during the early stages of revascularization after cutting experiment. {ECO:0000269|PubMed:12447534, ECO:0000269|PubMed:8575317}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of vascular development. May promote differentiation of precambial and cambial cells. {ECO:0000269|PubMed:11402194, ECO:0000269|PubMed:15598805}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G085000.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165. {ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:8575317}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003522716.10.0homeobox-leucine zipper protein ATHB-8
RefseqXP_028228252.10.0homeobox-leucine zipper protein ATHB-8-like
SwissprotQ391230.0ATHB8_ARATH; Homeobox-leucine zipper protein ATHB-8
TrEMBLA0A445KXQ00.0A0A445KXQ0_GLYSO; Homeobox-leucine zipper protein ATHB-8 isoform A
TrEMBLK7KIX60.0K7KIX6_SOYBN; Uncharacterized protein
STRINGGLYMA04G09000.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19463387
Representative plantOGRP6511671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Hategan L,Godza B,Kozma-Bognar L,Bishop GJ,Szekeres M
    Differential expression of the brassinosteroid receptor-encoding BRI1 gene in Arabidopsis.
    Planta, 2014. 239(5): p. 989-1001
    [PMID:24488524]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Kakehi J, et al.
    Mutations in ribosomal proteins, RPL4 and RACK1, suppress the phenotype of a thermospermine-deficient mutant of Arabidopsis thaliana.
    PLoS ONE, 2015. 10(1): p. e0117309
    [PMID:25625317]
  5. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  6. Liu S, et al.
    Expression of wild-type PtrIAA14.1, a poplar Aux/IAA gene causes morphological changes in Arabidopsis.
    Front Plant Sci, 2015. 6: p. 388
    [PMID:26082787]
  7. Yamaguchi YL, et al.
    Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots.
    Front Plant Sci, 2017. 8: p. 1195
    [PMID:28747918]
  8. Yamazaki K, et al.
    Suppression of DELLA signaling induces procambial cell formation in culture.
    Plant J., 2018. 94(1): p. 48-59
    [PMID:29383774]