PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G084900.1.p
Common NameGLYMA_04G084900, LOC100775634
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GATA
Protein Properties Length: 306aa    MW: 33900.5 Da    PI: 6.2267
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G084900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.48.2e-18193227135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  Glyma.04G084900.1.p 193 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 227
                          99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.0E-7519283IPR016679Transcription factor, GATA, plant
SMARTSM004011.2E-17187237IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.558187223IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.98E-16188251No hitNo description
Gene3DG3DSA:3.30.50.109.5E-15188224IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.75E-14192239No hitNo description
PROSITE patternPS003440193218IPR000679Zinc finger, GATA-type
PfamPF003201.1E-15193227IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MEAQEFFQNT FCPQFPSDSN ITPSNANPSA ATTDHFLVED FFDFSNDDDA TFDSLPTDVD  60
SPTVTPVDTT TNSNFPASAD AHFPGDLSVP YDDLAELEWL SKFADESFSS EDLQKLQLIT  120
GVRAQNDAAS SETRDPNPVM FNPQVSVRGK ARSKRTRGPP CNWTSRLVVL SPNTKSSSSS  180
HSGAEGGSEG RKCLHCATDK TPQWRTGPMG PKTLCNACGV RYKSGRLVPE YRPAASPTFV  240
LTKHSNSHRK VLELRRQKEM VKVQHQQHQF LQLQHQQNMM FDVPSSNGED FLIHQHVGPN  300
FTHLI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.566230.0somatic embryo
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G084900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003523746.10.0GATA transcription factor 12
RefseqXP_028228251.10.0GATA transcription factor 12-like
SwissprotO826324e-84GATA9_ARATH; GATA transcription factor 9
TrEMBLA0A445KYC40.0A0A445KYC4_GLYSO; GATA transcription factor
TrEMBLI1JUW30.0I1JUW3_SOYBN; GATA transcription factor
STRINGGLYMA04G08990.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13643395
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.12e-80GATA transcription factor 12
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]