PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G078600.1.p
Common NameGLYMA_04G078600, LOC100805060
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 358aa    MW: 39811.9 Da    PI: 8.9542
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G078600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM176.57.3e-55281551128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdeelv++yL +k+++++++  ++i++vd++k+ePw+Lp k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdk
  Glyma.04G078600.1.p  28 LPPGFRFHPTDEELVTCYLVNKISDSNFTG-RAITDVDLNKCEPWELPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDK 116
                          79*************************999.89***************99999************************************* PP

                  NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          e++++ ++el+g+kktLvfykgrap+gek++Wvmheyr+
  Glyma.04G078600.1.p 117 EIFNSeTSELIGMKKTLVFYKGRAPRGEKSNWVMHEYRI 155
                          ***9867888***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.24E-6423177IPR003441NAC domain
PROSITE profilePS5100560.73728177IPR003441NAC domain
PfamPF023653.9E-2829155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MQKEKEAIIK EGTTEIEMEG TRAKEGTLPP GFRFHPTDEE LVTCYLVNKI SDSNFTGRAI  60
TDVDLNKCEP WELPGKAKMG EKEWYFFSLR DRKYPTGVRT NRATNTGYWK TTGKDKEIFN  120
SETSELIGMK KTLVFYKGRA PRGEKSNWVM HEYRIHSKSS YRTNRQDEWV VCRVFKKSGG  180
AKKYHSSNHA RTVNPYSLEI GPSIMPPPMM QLGDPSAHFL YGRNYMNSAE LAELARVLRG  240
GGSTSSVNLP IQSQLSYPTS SSAGGGGFII SGLNLNLGGG ATATTQPILR PMQPSPPVHT  300
MAQVLDVNSS MMTTSSLGAE NNVGYGTEVS NNMNSHGNRY MGMDHHCMDL DNYWPSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-562718319174NAC domain-containing protein 19
3swm_B4e-562718319174NAC domain-containing protein 19
3swm_C4e-562718319174NAC domain-containing protein 19
3swm_D4e-562718319174NAC domain-containing protein 19
3swp_A4e-562718319174NAC domain-containing protein 19
3swp_B4e-562718319174NAC domain-containing protein 19
3swp_C4e-562718319174NAC domain-containing protein 19
3swp_D4e-562718319174NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00277DAPTransfer from AT2G24430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G078600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150351e-108AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006578207.10.0protein CUP-SHAPED COTYLEDON 3 isoform X1
RefseqXP_028228167.10.0protein CUP-SHAPED COTYLEDON 3-like isoform X1
TrEMBLK7KIT30.0K7KIT3_SOYBN; Uncharacterized protein
STRINGGLYMA04G08320.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50733253
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.21e-107NAC domain containing protein 38