PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G068000.1.p
Common NameGLYMA_04G068000, LOC100784216
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HB-other
Protein Properties Length: 323aa    MW: 36598.5 Da    PI: 5.5377
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G068000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox261.6e-08256304654
                          S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox   6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          +++k  +++Le+++++++ p+ +++  + + ++++ ++V  WF  +Ra 
  Glyma.04G068000.1.p 256 RLKKAHVDTLERVYRRSKRPTNAMISSIVHVTNIPRKKVVKWFEDKRAE 304
                          56788899***************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.361248308IPR001356Homeobox domain
SuperFamilySSF466893.46E-8250314IPR009057Homeodomain-like
SMARTSM003897.5E-4254312IPR001356Homeobox domain
CDDcd000866.52E-6254303No hitNo description
Gene3DG3DSA:1.10.10.601.3E-6256303IPR009057Homeodomain-like
PfamPF000464.8E-6256304IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002229Biological Processdefense response to oomycetes
GO:0009414Biological Processresponse to water deprivation
GO:0009682Biological Processinduced systemic resistance
GO:0009787Biological Processregulation of abscisic acid-activated signaling pathway
GO:0010118Biological Processstomatal movement
GO:0050832Biological Processdefense response to fungus
GO:2000022Biological Processregulation of jasmonic acid mediated signaling pathway
GO:2000071Biological Processregulation of defense response by callose deposition
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MAVVFQCLWC ARSDPFLTLP FQRKPLLCSV FLSSRPRNLC SSIVAAASKN KNKQKKSRDH  60
VTKDDEDGVD AFELLFKQLE EDLKRGDLSD DDGEDEISEE DMALLERELE NALGDFDGEL  120
LNSDVIDIET GGDPENDDDI EDGGDERSLN LRNWQMKKLA RALKAGRRKT SIKNLAADLC  180
LDRALVLQLL RDPPPNLLMM SLSIPDEPTT TVVSLETKPS EIVHKETSID HAEIESEPKA  240
KVPVHTLQRN WHAQKRLKKA HVDTLERVYR RSKRPTNAMI SSIVHVTNIP RKKVVKWFED  300
KRAEEGVPDR RVPYQRSVPE TA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.456520.0stem
Functional Description ? help Back to Top
Source Description
UniProtMay modulate chromatin structure by regulation of nucleosome assembly/disassembly (By similarity). Homeodomain transcription factor that mediates jasmonic acid (JA)-mediated COI1-dependent and abscisic acid (ABA)-mediated PMR4-dependent resistance to infection by necrotrophic fungal pathogens (e.g. B.cinerea and P.cucumerina) and bacterial pathogens (e.g. P.syringae DC3000); this resistance involves at least callose deposition (PubMed:15923348, PubMed:20836879, PubMed:21564353). Required for the P.fluorescens WCS417r-triggered JA-dependent induced systemic resistance (ISR) against both P.syringae DC3000 and H.arabidopsidis (PubMed:20836879). Negative regulator of the ABA-dependent drought resistance (PubMed:19175769). {ECO:0000250|UniProtKB:Q70Z19, ECO:0000269|PubMed:15923348, ECO:0000269|PubMed:19175769, ECO:0000269|PubMed:20836879, ECO:0000269|PubMed:21564353}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G068000.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Constitutively expressed in healthy plants but repressed in response to infection by necrotrophic fungi (PubMed:15923348). Repressed by drought and abscisic acid (ABA) (PubMed:19175769). {ECO:0000269|PubMed:15923348, ECO:0000269|PubMed:19175769}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003523691.10.0protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3
RefseqXP_028228024.10.0protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3-like
SwissprotQ8H0V57e-69OCP3_ARATH; Protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3
TrEMBLA0A0B2PKK50.0A0A0B2PKK5_GLYSO; Protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3
TrEMBLI1JUE10.0I1JUE1_SOYBN; Uncharacterized protein
STRINGGLYMA04G07230.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101813138
Representative plantOGRP69271618
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11270.12e-69overexpressor of cationic peroxidase 3
Publications ? help Back to Top
  1. García-Andrade J,Ramírez V,López A,Vera P
    Mediated plastid RNA editing in plant immunity.
    PLoS Pathog., 2013. 9(10): p. e1003713
    [PMID:24204264]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Gamir J,Pastor V,Kaever A,Cerezo M,Flors V
    Targeting novel chemical and constitutive primed metabolites against Plectosphaerella cucumerina.
    Plant J., 2014. 78(2): p. 227-40
    [PMID:24506441]