PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G064100.1.p
Common NameGLYMA_04G064100, LOC100790048
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TALE
Protein Properties Length: 412aa    MW: 45982 Da    PI: 6.1003
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G064100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.59.5e-083593922154
                          HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          k +yp++e++++L +++gL+ +q+ +WF N+R +
  Glyma.04G064100.1.p 359 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 392
                          469*****************************87 PP
2ELK28.92.7e-10313334122
                  ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                          ELKh+L+++Y+++++++++E++
  Glyma.04G064100.1.p 313 ELKHELKQGYKEKIVDIREEIL 334
                          9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.6E-20148192IPR005540KNOX1
PfamPF037908.0E-18150191IPR005540KNOX1
SMARTSM012563.5E-27201256IPR005541KNOX2
PfamPF037912.4E-20205255IPR005541KNOX2
PROSITE profilePS512139.969313333IPR005539ELK domain
PfamPF037899.5E-7313334IPR005539ELK domain
SMARTSM011886.1E-4313334IPR005539ELK domain
PROSITE profilePS5007111.726333396IPR001356Homeobox domain
SMARTSM003894.7E-11335400IPR001356Homeobox domain
SuperFamilySSF466894.23E-16335399IPR009057Homeodomain-like
CDDcd000864.29E-12336397No hitNo description
Gene3DG3DSA:1.10.10.604.2E-25340397IPR009057Homeodomain-like
PfamPF059201.1E-17353392IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MAYHHNPQEL PLHHFTDQQQ HHNQPLVDNS LLSDPASKPA SDPHQPAPNW LNNALLRTHY  60
TDNNNNNNVN AANNNTNNGT NFLNLHTSTS DSGQWLARPI LNRNHSEVID DVTGAGDSNM  120
AAAESGDLKG DAAAVEGGSD GLMNWQNARL KAEILAHPLY EQLLSAHVAC LRIATPVDQL  180
PRIDAQLTQS QNVVAKYSAF GQAIVGDDKE LDQFLSHYVL LLCSFKEQLQ QHVRVHAMEA  240
VMACWEIEQS LQSLTGVSPG EGTGATMSDE EDEQVDSDAN LFDGALDGPD SMGFGPLIPT  300
ENERSLMERV RHELKHELKQ GYKEKIVDIR EEILRKRRAG KLPGDTTSVL KAWWQSHSKW  360
PYPTEEDKAR LVQETGLQLK QINNWFINQR KRNWHSNPST STALKSKRKR S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1389409RKRNWHSNPSTSTALKSKRKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.201480.0cotyledon| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Maximally expressed in sepals, petals and fully expanded leaves. Also expressed in other flower organs and in developing leaves. Low level expression in stem internodes.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G064100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003522507.10.0homeobox protein knotted-1-like 3 isoform X2
SwissprotO041360.0KNAP3_MALDO; Homeobox protein knotted-1-like 3
TrEMBLI1JU990.0I1JU99_SOYBN; Uncharacterized protein
STRINGGLYMA04G06810.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101734108
Representative plantOGRP16717148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.20.0KNOTTED1-like homeobox gene 3