PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.04G061400.1.p | ||||||||
Common Name | GLYMA_04G061400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | WRKY | ||||||||
Protein Properties | Length: 221aa MW: 24926 Da PI: 8.3641 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.3 | 2e-30 | 161 | 219 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK+ ++++ pr+Y++C++a +Cpvkkkv+rs edp+v+++tYegeHnh Glyma.04G061400.1.p 161 RDGYQWRKYGQKVTRDNPSPRAYFKCSYApSCPVKKKVQRSVEDPSVLVTTYEGEHNHG 219 7***************************99****************************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF118290 | 1.96E-25 | 159 | 219 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 9.0E-29 | 159 | 219 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.0E-35 | 160 | 220 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 25.717 | 162 | 220 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.7E-25 | 162 | 218 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MASTNHNSSF SHSFCPLIAK QTLISSMGME PTCVDTSLNL NVIPSPHIAE EVLVEELRRL 60 SNENKRLTET LKHVCENYVA LQKHLNEFSQ LRNANFDKEA GTVPSLKRKA ESVNLFGINN 120 YTECSTITEE ETFKRPKHST EPKVSKVLTR TDASDTGLYV RDGYQWRKYG QKVTRDNPSP 180 RAYFKCSYAP SCPVKKKVQR SVEDPSVLVT TYEGEHNHGQ * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 8e-21 | 162 | 218 | 19 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 8e-21 | 162 | 218 | 19 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.36758 | 0.0 | leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250|UniProtKB:Q9SUP6}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.04G061400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT095976 | 0.0 | BT095976.1 Soybean clone JCVI-FLGm-15G12 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025983959.1 | 1e-165 | probable WRKY transcription factor 40 | ||||
Refseq | XP_028227918.1 | 1e-165 | probable WRKY transcription factor 40 | ||||
Swissprot | Q9SAH7 | 6e-55 | WRK40_ARATH; Probable WRKY transcription factor 40 | ||||
TrEMBL | K7KIE6 | 1e-164 | K7KIE6_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA04G06495.1 | 1e-165 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF973 | 34 | 115 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 1e-50 | WRKY DNA-binding protein 40 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.04G061400.1.p |