PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.04G057700.1.p | ||||||||
Common Name | GLYMA_04G057700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 287aa MW: 31813.7 Da PI: 4.9935 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.3 | 7.9e-18 | 37 | 86 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ykGVr +k +g+Wv+eIr p++ r r++lg+++++e+Aa+a +aa +l+g Glyma.04G057700.1.p 37 LYKGVRKRK-WGKWVSEIRLPNS---RERIWLGSYDSPEKAARAFDAALYCLRG 86 59****999.**********933...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.26E-27 | 36 | 96 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 4.5E-28 | 37 | 95 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.759 | 37 | 94 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.36E-20 | 37 | 94 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.2E-30 | 37 | 100 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.0E-9 | 38 | 49 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.3E-10 | 38 | 86 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.0E-9 | 60 | 76 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MENNNHAMAA GASSDSNTTT DHPTPKSSSC VNDNNKLYKG VRKRKWGKWV SEIRLPNSRE 60 RIWLGSYDSP EKAARAFDAA LYCLRGRHAN FNFPNTPCNM DTTNAPHQSL TPQEIQEVAA 120 NFANQAPLLQ KPQEPLEYKC EMKVTQQKTP QLSGGGGNSS SFGSKSSCKS DSKQDSTGTS 180 TNTTCTPTTT ASSCSTTMYE CDGTVQVDHG DMDWTFLNVF DYSNEVFPVV GSDYDLHNSE 240 LHKMHSGSGE LLYSTPFDQG YEQLIEADHD DDDPFSHQSF LWNWNF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-14 | 26 | 95 | 3 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 38 | 44 | KGVRKRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.04G057700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 1e-79 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003523659.1 | 0.0 | ethylene-responsive transcription factor ERF016 | ||||
Refseq | XP_028227872.1 | 0.0 | ethylene-responsive transcription factor ERF016-like | ||||
TrEMBL | A0A445KWV2 | 0.0 | A0A445KWV2_GLYSO; Ethylene-responsive transcription factor ERF018 | ||||
STRING | GLYMA04G06095.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1479 | 33 | 99 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74930.1 | 3e-42 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.04G057700.1.p |