PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G052000.5.p
Common NameGLYMA_04G052000, LOC100794605
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HSF
Protein Properties Length: 373aa    MW: 41922.8 Da    PI: 4.847
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G052000.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.41.5e-35441352102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+++++ed+++++++sws++ nsfvv+d+++f++++Lp+yFkh+nf+SFvRQLn+YgF+k++ ++         weF+++ F +g++
  Glyma.04G052000.5.p  44 FLTKTFDVVEDPSTNDIVSWSRSRNSFVVWDSHKFSTTILPRYFKHNNFSSFVRQLNTYGFRKIDPDK---------WEFANEGFLAGQR 124
                          9********************999*****************************************999.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                          +ll++ikr+++
  Glyma.04G052000.5.p 125 QLLKTIKRRRH 135
                          ********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004158.7E-6040133IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.6E-3740133IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.77E-3340133IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.9E-194467IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.0E-3144133IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-198294IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434083107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-1995107IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MKGVTVKVEE TMAYANAAST SPTTSSNLSP QPMEGLHEVG PPPFLTKTFD VVEDPSTNDI  60
VSWSRSRNSF VVWDSHKFST TILPRYFKHN NFSSFVRQLN TYGFRKIDPD KWEFANEGFL  120
AGQRQLLKTI KRRRHVTVTQ TQSHEGGSGA CVELGEFGLE GEMERLRRDR TVLMAEIVRL  180
RQQQHNSREQ LLSMETRLQA TEKKHQQMMN FLAKALNNQA FIQQFLQRNA QNKELQGARR  240
KRRLTATPSV ENLQQDHFAL SIEEGSATIE SQMESFFSAA CNDPLESNSE LKDPILSSVP  300
VASGSNLGEV SDSVWEDLLN QDLVAGDPEE EVVIGDFSQV DVPVEDLIAD ADEWSEDLQN  360
LVDHMGYLGS KP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-264213327129Heat shock factor protein 1
5d5v_B5e-264213327129Heat shock factor protein 1
5d5v_D5e-264213327129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126132LKTIKRR
2164169RLRRDR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.86360.0pod| seed coat| somatic embryo
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G052000.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN8963060.0JN896306.1 Glycine max heat shock transcription factor HSFA2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001274388.10.0heat stress transcription factor 8
RefseqXP_025983868.10.0heat shock factor protein HSF30-like isoform X1
RefseqXP_028227804.10.0heat shock factor protein HSF30-like
SwissprotP411521e-126HSF30_SOLPE; Heat shock factor protein HSF30
TrEMBLA0A445KVW40.0A0A445KVW4_GLYSO; Heat shock factor protein HSF30 isoform A
TrEMBLI1JTX50.0I1JTX5_SOYBN; Heat shock transcription factor HSFA2
STRINGGLYMA04G05500.50.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-108heat shock transcription factor A2
Publications ? help Back to Top
  1. Scharf KD,Rose S,Thierfelder J,Nover L
    Two cDNAs for tomato heat stress transcription factors.
    Plant Physiol., 1993. 102(4): p. 1355-6
    [PMID:8278556]