PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G051300.1.p
Common NameGLYMA_04G051300, LOC102659929
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GATA
Protein Properties Length: 293aa    MW: 32518.8 Da    PI: 9.0979
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G051300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.52.1e-19155188134
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                          C+ C+tt+TplWR+gp+g+k+LCnaCG+++rk +
  Glyma.04G051300.1.p 155 CADCNTTSTPLWRSGPNGPKSLCNACGIRQRKAR 188
                          *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577163.99E-13149190No hitNo description
SMARTSM004011.2E-19149200IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.993149185IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.5E-15153188IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.36E-13154191No hitNo description
PROSITE patternPS003440155180IPR000679Zinc finger, GATA-type
PfamPF003204.7E-17155188IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MTSVSLNPNP PCPTIQDQSQ LFISANNHES TSLSCCTFFH ILDQSQTKDI RDLRHGHQQD  60
GKLVFHIGPS NNNNQVCNSS SVKLQPKPVK ADSSSECGHH NVSLYKIEDE ENKRDHDYEK  120
WMSSTARLTR KMMRLPSTSS DLATKKALNN ITRVCADCNT TSTPLWRSGP NGPKSLCNAC  180
GIRQRKARRA MAEAVNGFAP SVNSSSTKIR VHHKEKKSRT NHFARFRLKC KLATTSTAEG  240
TSQQENVKID LNDFGLSLRD SSALKQQVFP IMDEVAQAAM LLMDLSCGFV YC*
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO314679180.0
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G051300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006578078.10.0putative GATA transcription factor 22
RefseqXP_028226996.10.0putative GATA transcription factor 22
TrEMBLA0A445KVV20.0A0A445KVV2_GLYSO; Putative GATA transcription factor 22
TrEMBLK7KI740.0K7KI74_SOYBN; Uncharacterized protein
STRINGGLYMA04G05431.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19923484
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.11e-23cytokinin-responsive gata factor 1