PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.04G051000.2.p | ||||||||
Common Name | GLYMA_04G051000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB_related | ||||||||
Protein Properties | Length: 189aa MW: 20833.4 Da PI: 10.5328 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.8 | 1.4e-14 | 113 | 157 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+++++ + ++lG+g+W+ I+r + ++Rt+ q+ s+ qky Glyma.04G051000.2.p 113 PWTEEEHQIFLIGLEKLGKGNWRGISRSFVTTRTPTQVASHAQKY 157 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50158 | 8.614 | 5 | 22 | IPR001878 | Zinc finger, CCHC-type |
PROSITE profile | PS51294 | 18.987 | 106 | 162 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.24E-17 | 108 | 162 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.0E-17 | 109 | 161 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 9.5E-12 | 110 | 156 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-9 | 110 | 160 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.9E-12 | 113 | 157 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.30E-9 | 113 | 157 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006338 | Biological Process | chromatin remodeling | ||||
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter | ||||
GO:0035066 | Biological Process | positive regulation of histone acetylation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0003713 | Molecular Function | transcription coactivator activity | ||||
GO:0004402 | Molecular Function | histone acetyltransferase activity | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MGIARKCSYC GNLGHNARTC KSTLSQGQLK LFGVQLDVSS FSSSSNSFSS SPSYSAMKRS 60 FSTNYLLSSW PSSSVPSSFS SPSLLGANEN LDGYLLNANS LISTIQDAKK GVPWTEEEHQ 120 IFLIGLEKLG KGNWRGISRS FVTTRTPTQV ASHAQKYYLR QSQNSFNKRK HRPSLLDNVS 180 KLKHFSFF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.04G051000.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014630715.1 | 1e-127 | probable transcription factor At5g61620 isoform X2 | ||||
Refseq | XP_028227793.1 | 1e-127 | probable transcription factor At5g61620 isoform X2 | ||||
TrEMBL | I1JTW5 | 1e-134 | I1JTW5_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA04G05390.1 | 9e-97 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56840.1 | 2e-43 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.04G051000.2.p |