PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.04G049300.1.p | ||||||||
Common Name | GLYMA_04G049300, LOC100790927 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 291aa MW: 33159.2 Da PI: 8.5554 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.1 | 1.8e-19 | 135 | 189 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +k+ ++tkeq +Le+ F+++ ++s ++++eLAkkl+L +rqV vWFqNrRa+ k Glyma.04G049300.1.p 135 KKKLRLTKEQSAVLEDSFKEHYTISPKQKQELAKKLNLRTRQVEVWFQNRRARTK 189 78889************************************************98 PP | |||||||
2 | HD-ZIP_I/II | 111.8 | 4.5e-36 | 135 | 223 | 1 | 89 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rl+keq+++LE+sF+e+ +++p++K+ela++L+l++rqv+vWFqnrRARtk+kq+E++ e Lk+++++l+een++Leke +eL++ Glyma.04G049300.1.p 135 KKKLRLTKEQSAVLEDSFKEHYTISPKQKQELAKKLNLRTRQVEVWFQNRRARTKLKQTEVERELLKKCCETLTEENKMLEKELQELKS 223 59*************************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.35E-18 | 128 | 192 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.1E-18 | 129 | 185 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.572 | 131 | 191 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.2E-17 | 133 | 195 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.54E-16 | 134 | 192 | No hit | No description |
Pfam | PF00046 | 6.3E-17 | 135 | 189 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 166 | 189 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 3.5E-15 | 191 | 235 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
MGFDISKPGL RLGLGLGLHD DHSSENCMKT NEQSQRQRQS QKKKETDPCN KAYPSLKLGP 60 PDDEANNNNQ QITNIESDEY YYFHPHASSR SPSAVSSFSN SSSIIKRERE QLELEVEKIS 120 LSRDFVDVDE NGNPKKKLRL TKEQSAVLED SFKEHYTISP KQKQELAKKL NLRTRQVEVW 180 FQNRRARTKL KQTEVERELL KKCCETLTEE NKMLEKELQE LKSTKTSMGP FYMQLPVESL 240 RICPSCERIS GGNNGSSPTT ALLEAPKAHK DQPFYKNNYT FTQSSAAFAS * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 183 | 191 | RRARTKLKQ |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.04G049300.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}. | |||||
UniProt | INDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003523637.1 | 0.0 | homeobox-leucine zipper protein HOX15 | ||||
Swissprot | A2XE76 | 1e-56 | HOX19_ORYSI; Homeobox-leucine zipper protein HOX19 | ||||
Swissprot | Q8GRL4 | 1e-56 | HOX19_ORYSJ; Homeobox-leucine zipper protein HOX19 | ||||
TrEMBL | K7KI54 | 0.0 | K7KI54_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA04G05200.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1144 | 33 | 107 | Representative plant | OGRP196 | 16 | 156 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 5e-57 | homeobox from Arabidopsis thaliana |
Link Out ? help Back to Top | |
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Phytozome | Glyma.04G049300.1.p |
Entrez Gene | 100790927 |