PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.04G042300.1.p | ||||||||
Common Name | Glyma04g04490.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 260aa MW: 28587.4 Da PI: 8.8482 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.3 | 4.2e-19 | 5 | 50 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEde l ++v+ +G+++W+ I++ ++ gR++k+c++rw + Glyma.04G042300.1.p 5 KGPWSPEEDEALRRLVQTYGPRNWSVISKSIP-GRSGKSCRLRWCNQ 50 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 57.6 | 2.8e-18 | 57 | 101 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r ++T+eEde +++a++++G++ W+tIar ++ gRt++ +k++w++ Glyma.04G042300.1.p 57 RRPFTAEEDEAILKAHARFGNK-WATIARFLN-GRTDNAIKNHWNST 101 679*******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 28.64 | 1 | 55 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.31E-33 | 2 | 98 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-17 | 4 | 53 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.5E-19 | 5 | 50 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-26 | 6 | 58 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.51E-17 | 7 | 49 | No hit | No description |
SMART | SM00717 | 3.8E-16 | 56 | 104 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-15 | 57 | 101 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 21.992 | 57 | 106 | IPR017930 | Myb domain |
CDD | cd00167 | 2.42E-13 | 59 | 102 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.6E-24 | 59 | 105 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MDRIKGPWSP EEDEALRRLV QTYGPRNWSV ISKSIPGRSG KSCRLRWCNQ LSPEVERRPF 60 TAEEDEAILK AHARFGNKWA TIARFLNGRT DNAIKNHWNS TLKRKCSEPL SEPRPLKRSA 120 TVSGSQSGSD LSDSGLPIIL ARSVSVTVAP SNHLAETASS SVTDPATLLS LSLPGFDSCD 180 GANNGPGPNQ GPSCGPFQEI PMLGSQKQLF SQEFMKVMQE MIRVEVRNYM SVLERNGVCM 240 QTDAIRNSVL ERMGIGRVE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-42 | 4 | 106 | 3 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 5e-42 | 4 | 106 | 57 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 5e-42 | 4 | 106 | 57 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 9e-43 | 4 | 106 | 3 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 9e-43 | 4 | 106 | 3 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.23826 | 0.0 | cotyledon| leaf| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.04G042300.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031188 | 0.0 | KT031188.1 Glycine max clone HN_CCL_41 MYB/HD-like transcription factor (Glyma04g04490.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001235715.1 | 0.0 | MYB transcription factor MYB68 | ||||
Swissprot | O23160 | 3e-80 | MYB73_ARATH; Transcription factor MYB73 | ||||
TrEMBL | A0A0K2CTC6 | 0.0 | A0A0K2CTC6_SOYBN; MYB/HD-like transcription factor (Fragment) | ||||
STRING | GLYMA04G04490.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF843 | 34 | 124 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37260.1 | 3e-79 | myb domain protein 73 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.04G042300.1.p |
Publications ? help Back to Top | |||
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