PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.04G041200.2.p | ||||||||
Common Name | GLYMA_04G041200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 161aa MW: 17875.8 Da PI: 9.7538 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.1 | 1.9e-17 | 33 | 82 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r +k +g+WvAeIr+p +kr r++lg++ t+ Aa+a++ a l+g Glyma.04G041200.2.p 33 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYATPVAAARAYDTAVFHLRG 82 69*****99.**********9...336**********************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 5.95E-21 | 33 | 91 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.155 | 33 | 90 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.4E-37 | 33 | 96 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.48E-28 | 34 | 92 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.5E-30 | 34 | 91 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.0E-12 | 34 | 45 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.5E-10 | 34 | 82 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.0E-12 | 72 | 92 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001078 | Molecular Function | transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MEEAGLGDCC SSNSTITRKS DKRKQQHQQQ EKPYRGIRMR KWGKWVAEIR EPNKRSRIWL 60 GSYATPVAAA RAYDTAVFHL RGPSARLNFP ELLSQDDDVS TQQQGNMSAD SIRKKATQVG 120 ARVDALQTAL QQSSSSHSAN SSHVSSSDKP DLNEYPKPED * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-15 | 32 | 90 | 4 | 63 | ATERF1 |
3gcc_A | 1e-15 | 32 | 90 | 4 | 63 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 17 | 24 | RKSDKRKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.62663 | 0.0 | leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed at low levels in flowers, leaves, and stems, and at very low levels in roots. {ECO:0000269|PubMed:9192694}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.04G041200.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LK936507 | 0.0 | LK936507.1 Glycine max mRNA for DREB2 factor (DREB2 gene), cultivar DT2008. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025983950.1 | 1e-117 | ethylene-responsive transcription factor RAP2-1 isoform X2 | ||||
Refseq | XP_028227675.1 | 1e-117 | ethylene-responsive transcription factor RAP2-1-like | ||||
Swissprot | Q8LC30 | 2e-49 | RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1 | ||||
TrEMBL | A0A0R0KBF1 | 1e-116 | A0A0R0KBF1_SOYBN; Uncharacterized protein | ||||
TrEMBL | A0A445KW21 | 1e-116 | A0A445KW21_GLYSO; Ethylene-responsive transcription factor RAP2-1 | ||||
STRING | GLYMA04G04355.2 | 1e-116 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67190.1 | 1e-49 | DREB and EAR motif protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.04G041200.2.p |
Publications ? help Back to Top | |||
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